Hg_chrom8_TN10mRNA_15305
Organism: Heterodera glycines Gene Locus: chr8:3860237-3862404 Feature type: polypeptideProtein Sequence
Length: 409
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.54 | 0.682 | 0.756 | 0.927 | 3.301 | 0.94 | 1.048 | 0.611 | 0.652 | 0.694 | 1.334 | 1.726 | 0.611 | 0.658 | 2.195 | 0.908 | 0.641 | 0.519 | 1.693 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14452
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cell_membrane
|
nucleus
|
RREEKEKTEGKGRKI,RRDESGGSWMVSKRGWR,RRKPEEKDEEEESRKSIK,KRILEEMRTKMDERREEK,KKEVDKTNAMARRRKVKKE,NAMARRRKVKKEEEEERRGGGEEERGRGGGEARREKSGRRGTERGEKSGPRRD
|
— | — | — | — |
1-30
|
0.903
|
1.000
|
0.000
|
0.000
|
0.092
|
0.165
|
0.011
|
0.202
|
0.163
|
0.074
|
0.215
|
0.097
|
0.817
|
0.413
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011835
|
1.000
|
1.000
|
Hsc_gene_3191.t1
|
— | — |
P34554.3 Uncharacterized protein T05G5.1 [Caenorhabditis elegans]
|
KAI1721429.1 protein SUP-1 [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000742+38-77+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
82-409
|
1.000
|
1-81
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.640
|
47373.480
|
4.883
|
-15.500
|
44.743
|
5.623
|
61.614
|
38.386
|
20.782
|
23.961
|
40.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
886.472
|
1917.568
|
801.281
|
574.341
|
591.888
|
3906.955
|
741.037
|
372.637
|
91.314
|
470.191
|
307.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.492
|
-1.877
|
-0.369
|
— |
2.736
|
-2.387
|
-3.493
|
1.134
|
— | — | — | — | — |