Hg_chrom8_TN10mRNA_15306
Organism: Heterodera glycines Gene Locus: chr8:3867544-3878982 Feature type: polypeptideProtein Sequence
Length: 2,395
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.956 | 1.136 | 0.653 | 0.792 | 0.626 | 3.126 | 1.049 | 1.816 | 0.622 | 0.683 | 0.696 | 2.677 | 0.847 | 1.542 | 0.844 | 1.145 | 0.801 | 0.696 | 0.546 | 0.651 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14453
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRKL,PPLKRIK,KKVIQHTKHCKRRQT,RKTPHMFNAFLKLTKK,KKKNNLKKSAQNSKKKTG,KRSQNRQAERMMQRRMMK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.850
|
0.053
|
0.005
|
0.437
|
0.068
|
0.033
|
0.042
|
0.004
|
0.066
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000619
|
1.000
|
6.000
|
Hsc_gene_1022.t1;Hsc_gene_1022.t2;Hsc_gene_3179.t1;Hsc_gene_3180.t1;Hsc_gene_3192.t1;Hsc_gene_3192.t2
|
Hsc_gene_3185.t1;Hsc_gene_3192.t1;Hsc_gene_3192.t2
|
— |
P34545.6 Protein cbp-1 [Caenorhabditis elegans]
|
KAI3416168.1 protein of unknown function (DUF902) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003712|GO:0004402|GO:0005515|GO:0006355|GO:0008270
|
GO:0008150_0.962|GO:0009987_0.932|GO:0065007_0.877|GO:0050789_0.875|GO:0005575_0.872|GO:0110165_0.868|GO:0050794_0.865|GO:0003674_0.850|GO:0008152_0.834|GO:0043170_0.834|GO:0019222_0.818|GO:0031323_0.818|GO:0044237_0.818|GO:0060255_0.816|GO:0005622_0.815|GO:0009058_0.807|GO:0009889_0.807|GO:0031326_0.807|GO:0044249_0.807|GO:0009059_0.803|GO:0010467_0.803|GO:0010468_0.803|GO:0010556_0.803|GO:0005488_0.799|GO:0016020_0.793|GO:0043226_0.793|GO:0044238_0.792|GO:0080090_0.792|GO:0048518_0.782|GO:0048522_0.782|GO:0032502_0.780|GO:0048856_0.780|GO:0006139_0.778|GO:0016070_0.778|GO:0019219_0.778|GO:0051252_0.778|GO:0090304_0.778|GO:0043229_0.776|GO:0006351_0.768|GO:0006355_0.768|GO:0032774_0.768|GO:0034654_0.768|GO:0141187_0.768|GO:2001141_0.768|GO:0016043_0.757|GO:0071840_0.757|GO:0032501_0.749|GO:0009893_0.747|GO:0010604_0.745|GO:0009891_0.741|GO:0031325_0.740|GO:0005634_0.733|GO:0043227_0.733|GO:0043231_0.733|GO:0031328_0.729|GO:0010557_0.726|GO:0006357_0.724|GO:0006366_0.724|GO:0005515_0.716|GO:0045935_0.709|GO:0051254_0.709|GO:0045893_0.696|GO:1902680_0.696|GO:0050896_0.688|GO:0045944_0.658|GO:0007275_0.644|GO:0006325_0.617|GO:0006338_0.616|GO:0003824_0.611|GO:0140096_0.611|GO:0016740_0.577|GO:0016746_0.553|GO:0140993_0.551|GO:0048731_0.539|GO:0008134_0.534|GO:0030154_0.534|GO:0048869_0.534|GO:0008080_0.530|GO:0016407_0.530|GO:0016410_0.530|GO:0016747_0.530|GO:0034212_0.530|GO:0061733_0.529|GO:0004402_0.525|GO:0140297_0.523|GO:0003676_0.511|GO:0097159_0.511
|
IPR000197+601-689_602-689_608-686_1846-1929_1847-1927_1854-1926+|IPR000433+1789-1828_1792-1828+|IPR001487+1111-1222_1125-1206_1131-1203_1134-1147_1150-1166_1166-1184_1184-1203+|IPR003101+841-920_844-921+|IPR010303+1220-1263_1234-1321+|IPR013083+1314-1354+|IPR013178+272-1959_1385-1728_1386-1724+|IPR031162+1366-1784+|IPR035898+594-694_599-692_1841-1956_1852-1931+|IPR036427+1100-1225_1109-1225+|IPR036529+844-926_844-927+|IPR038547+1234-1313+|IPR043145+1788-1836+
|
SM00291+1789-1828+|SM00297+1111-1222+|SM00551+602-689_1847-1927+|SM01250+1385-1728+
|
PF00439+1125-1206+Bromodomain|PF00569+1792-1828+Zinc_finger,_ZZ_type|PF02135+608-686_1854-1926+TAZ_zinc_finger|PF02172+844-921+KIX_domain|PF06001+1220-1263+CREB-binding_protein/p300,_atypical_RING_domain|PF08214+1386-1724+Histone_acetylation_protein
|
— |
PTHR13808+272-1959+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-617;724-859;910-1114;1605-1699;1932-2395
|
4.000
|
618-723;860-909;1115-1604;1700-1931
|
8han_K
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.930
|
261737.540
|
8.594
|
76.500
|
19.708
|
9.603
|
49.687
|
50.313
|
12.359
|
7.349
|
53.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
3152.913
|
10851.539
|
4544.896
|
3182.765
|
2536.253
|
2441.029
|
2725.024
|
2395.777
|
3236.401
|
612.712
|
1737.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.485
|
-1.907
|
-0.406
|
-0.359
|
— |
0.169
|
— |
0.327
|
2.318
|
— |
2.421
|
— | — |
No JSON data available for plots.