SCN Proteipedia

Hg_chrom8_TN10mRNA_15307

Organism: Heterodera glycines Gene Locus: chr8:3883277-3888161 Feature type: polypeptide

Protein Sequence

Length: 551

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.76	1.14	0.726	0.814	0.726	0.745	0.713	0.907	1.734	1.422	0.577	1.388	1.361	0.942	1.482	1.4	0.833	1.017	1.117	0.747	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14454	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.930

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	FKVK,RKRK,VKKKRGPR,KKKRGPRETVEMGRERKA,KKRGPRETVEMGRERKAWR	—	—	—	—	—	—	0.000	—	—	0.107	0.065	0.002	0.161	0.180	0.316	0.241	0.006	0.852	0.056

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004717	1.000	2.000	Hsc_gene_3194.t1;Hsc_gene_3194.t2	Hsc_gene_3193.t1;Hsc_gene_3194.t1;Hsc_gene_3194.t2	—	Q25190.1 5-hydroxytryptamine receptor [Heliothis virescens]	KAI6176611.1 G-PROTEIN-RECEP-F1-2 domain-containing protein [Aphelenchoides bicaudatus]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.970\|GO:0009987_0.939\|GO:0065007_0.903\|GO:0050789_0.892\|GO:0005575_0.879\|GO:0110165_0.876\|GO:0050794_0.859\|GO:0007154_0.804\|GO:0023052_0.803\|GO:0050896_0.774\|GO:0003674_0.771\|GO:0051716_0.756\|GO:0007165_0.723\|GO:0060089_0.713\|GO:0038023_0.711\|GO:0004888_0.691\|GO:0007186_0.671\|GO:0005622_0.649\|GO:0016020_0.648\|GO:0010646_0.619\|GO:0023051_0.618\|GO:0071944_0.611\|GO:0004930_0.609\|GO:0005886_0.606\|GO:0008227_0.570\|GO:0048583_0.520\|GO:0009966_0.510\|GO:0005488_0.503	IPR000276+107-131_116-541_122-526_141-162_186-208_192-208_221-242_268-291_463-487_508-534+\|IPR017452+122-526+	SM01381+116-541+	PF00001+122-526+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24247+104-546+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	303-402	2.000	1-302;403-551	7e33_R	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.906	61578.310	9.325	20.000	21.234	10.708	43.920	56.080	12.886	8.348	50.272

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	darkturquoise	908.026	1031.453	2701.969	981.448	310.082	357.282	179.841	1993.779	939.295	434.697	650.953

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.160	-0.209	-1.353	-1.694	—	-0.983	2.380	-3.332	2.753	—	—	—	—

No JSON data available for plots.

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