SCN Proteipedia

Hg_chrom8_TN10mRNA_15308

Organism: Heterodera glycines Gene Locus: chr8:3897860-3903345 Feature type: polypeptide

Protein Sequence

Length: 687

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.016	1.489	0.741	0.803	1.237	1.306	0.503	1.383	1.164	1.141	1.037	2.226	1.536	0.868	0.891	0.977	0.74	0.926	0.784	0.514	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14455	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.907

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	46-86	0.982	—	—	0.000	—	—	0.267	0.211	0.039	0.691	0.144	0.402	0.251	0.121	0.394	0.173

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003796	2.000	1.000	Hsc_gene_3196.t2	Hsc_gene_12213.t1;Hsc_gene_3196.t1;Hsc_gene_3196.t2	—	P45436.2 Cell death protein 3 [Caenorhabditis remanei]	KAI3420108.1 Ced-3p [Globodera pallida]	No	-0.280

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004197\|GO:0006508\|GO:0008234	GO:0008150_0.923\|GO:0009987_0.871\|GO:0005575_0.828\|GO:0110165_0.824\|GO:0003674_0.781\|GO:0065007_0.705\|GO:0005622_0.702\|GO:0050789_0.685\|GO:0016020_0.680\|GO:0050794_0.667\|GO:0008219_0.658\|GO:0012501_0.658\|GO:0006915_0.655\|GO:0050896_0.653\|GO:0003824_0.649\|GO:0005737_0.614\|GO:0008152_0.610\|GO:0048518_0.608\|GO:0016787_0.607\|GO:0140096_0.596\|GO:0008233_0.583\|GO:0048522_0.570\|GO:0044238_0.564\|GO:0043226_0.560\|GO:0051716_0.551\|GO:0004175_0.548\|GO:0008234_0.547\|GO:0043170_0.547\|GO:0043229_0.542\|GO:0032502_0.525\|GO:0048856_0.525\|GO:0004197_0.520\|GO:0019538_0.519\|GO:0043227_0.511\|GO:0005488_0.508	IPR001309+392-517+\|IPR002138+590-680+\|IPR011029+157-260+\|IPR011600+393-677+\|IPR015917+385-679_385-680_392-405_411-429_429-447_463-471_498-516+\|IPR016129+457-471+\|IPR029030+384-680+\|IPR033139+504-515+	SM00115+385-680+	PF00656+393-677+Caspase_domain	—	PTHR47901+304-681+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-687	6pdq_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.669	77518.900	7.211	7.500	25.473	11.063	48.326	51.674	13.974	11.499	47.744

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	blue	1748.544	171.790	26.587	73.525	292.258	334.712	177.453	38.491	5.139	7227.971	4132.472

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.920	-1.361	1.575	1.958	—	-0.906	-3.238	2.352	-10.530	—	-4.124	—	—

No JSON data available for plots.

Back to Browser