Hg_chrom8_TN10mRNA_15311
Organism: Heterodera glycines Gene Locus: chr8:3908157-3911029 Feature type: polypeptideProtein Sequence
Length: 221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.368 | 0.987 | 2.34 | 1.207 | 1.856 | 0.539 | 1.584 | 0.804 | 0.734 | 1.097 | 0.532 | 0.628 | 0.957 | 1.478 | 1.228 | 0.964 | 0.548 | 1.74 | 0.399 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.591
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.545
|
0.162
|
0.007
|
0.606
|
0.088
|
0.093
|
0.095
|
0.046
|
0.153
|
0.108
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011836
|
1.000
|
1.000
|
Hsc_gene_3200.t1
|
Hsc_gene_3200.t1
|
— |
Q6NUB7.1 Ubiquitin thioesterase zranb1-B [Xenopus laevis]
|
KAH7731945.1 trabid-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.947|GO:0050789_0.690|GO:0065007_0.690|GO:0009987_0.675|GO:0050794_0.675|GO:0032502_0.654|GO:0048856_0.654|GO:0003674_0.602|GO:0050896_0.598|GO:0048518_0.596|GO:0051716_0.578|GO:0048522_0.576|GO:0023052_0.575|GO:0005575_0.574|GO:0007154_0.565|GO:0110165_0.564|GO:0007165_0.549|GO:0009653_0.545|GO:0005622_0.506|GO:0048583_0.501
|
IPR001876+13-42_15-39_17-36_67-98_71-95_72-94_73-92_127-156_129-153_130-151_131-150+|IPR036443+69-94_129-154+|IPR053000+9-97+
|
SM00547+15-39_71-95_129-153+
|
PF00641+72-94_130-151+Zn-finger_in_Ran_binding_protein_and_others
|
— |
PTHR46622+9-97+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
153-221
|
1.000
|
1-152
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
25133.090
|
7.973
|
7.500
|
30.317
|
9.050
|
57.919
|
42.081
|
17.647
|
12.670
|
52.036
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey60
|
999.629
|
981.423
|
736.282
|
816.286
|
1019.271
|
1184.753
|
1090.322
|
1180.335
|
1449.672
|
657.870
|
997.214
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.642
|
-0.403
|
0.256
|
0.288
|
0.232
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.