Hg_chrom8_TN10mRNA_15314
Organism: Heterodera glycines Gene Locus: chr8:3918843-3926583 Feature type: polypeptideProtein Sequence
Length: 1,225
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.139 | 1.082 | 0.609 | 0.507 | 1.075 | 0.628 | 0.7 | 1.143 | 0.762 | 1.037 | 0.482 | 0.816 | 1.066 | 1.35 | 1.549 | 1.574 | 1.325 | 0.977 | 0.879 | 0.84 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14461
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKLENGDETPNTLIRRLAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.117
|
0.079
|
0.024
|
0.184
|
0.197
|
0.158
|
0.333
|
0.070
|
0.743
|
0.341
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011838
|
1.000
|
1.000
|
Hsc_gene_3198.t1
|
Hsc_gene_3198.t1
|
— | — |
KAI1727450.1 tyrosine-protein phosphatase 10D [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.958|GO:0005575_0.942|GO:0110165_0.937|GO:0009987_0.914|GO:0016020_0.878|GO:0065007_0.862|GO:0071944_0.855|GO:0003674_0.851|GO:0050789_0.839|GO:0005886_0.833|GO:0050794_0.816|GO:0050896_0.805|GO:0032501_0.793|GO:0032502_0.778|GO:0048856_0.778|GO:0051716_0.766|GO:0071840_0.762|GO:0016043_0.761|GO:0007275_0.747|GO:0048731_0.741|GO:0007154_0.737|GO:0023052_0.736|GO:0048519_0.730|GO:0030154_0.724|GO:0048468_0.724|GO:0048869_0.724|GO:0007165_0.722|GO:0007399_0.719|GO:0048523_0.716|GO:0010646_0.713|GO:0022008_0.711|GO:0023051_0.711|GO:0048583_0.708|GO:0048699_0.704|GO:0009653_0.700|GO:0009966_0.699|GO:0030182_0.699|GO:0007166_0.698|GO:0003008_0.695|GO:0048666_0.694|GO:0009888_0.690|GO:0007267_0.689|GO:0030030_0.688|GO:0120036_0.688|GO:0009719_0.685|GO:0031175_0.685|GO:0060429_0.682|GO:0000902_0.681|GO:0035295_0.681|GO:0003824_0.680|GO:0007417_0.679|GO:0009968_0.679|GO:0010648_0.679|GO:0023057_0.679|GO:0048585_0.679|GO:0050877_0.679|GO:0048667_0.678|GO:0002009_0.677|GO:0007610_0.677|GO:0035239_0.677|GO:0048729_0.677|GO:0048812_0.677|GO:0048858_0.677|GO:0060562_0.677|GO:0120039_0.677|GO:0007409_0.676|GO:0061564_0.676|GO:0071495_0.676|GO:0016787_0.675|GO:0050890_0.675|GO:0001763_0.674|GO:0007167_0.674|GO:0007611_0.674|GO:0048754_0.674|GO:0061138_0.674|GO:0070848_0.674|GO:0071363_0.674|GO:0007169_0.670|GO:0007173_0.670|GO:0007411_0.670|GO:0007424_0.670|GO:0007613_0.670|GO:0007616_0.670|GO:0008045_0.670|GO:0008543_0.670|GO:0030947_0.670|GO:0030948_0.670|GO:0038127_0.670|GO:0040036_0.670|GO:0040037_0.670|GO:0042058_0.670|GO:0042059_0.670|GO:0044344_0.670|GO:0048010_0.670|GO:0060446_0.670|GO:0060541_0.670|GO:0071774_0.670|GO:0090287_0.670|GO:0090288_0.670|GO:0097485_0.670|GO:0099156_0.670|GO:1901184_0.670|GO:1901185_0.670|GO:0060089_0.669|GO:0140096_0.669|GO:0038023_0.666|GO:0004888_0.662|GO:0016788_0.655|GO:0004721_0.650|GO:0004725_0.650|GO:0005001_0.650|GO:0016791_0.650|GO:0019198_0.650|GO:0042578_0.650|GO:0098590_0.596|GO:0042995_0.580|GO:0120025_0.578|GO:0043005_0.569|GO:0030424_0.555|GO:0045177_0.547
|
IPR003961+289-389_290-375_290-376_674-748_761-867_878-958_974-1141+|IPR013783+281-386_759-880+|IPR036116+285-398_668-858_789-954+|IPR050991+508-973+
|
SM00060+290-375_674-748_761-867_878-958_974-1141+
|
— | — |
PTHR46708+508-973+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61;390-571;1017-1060
|
3.000
|
62-389;572-1016;1061-1225
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
133946.350
|
8.595
|
26.000
|
22.857
|
10.122
|
49.061
|
50.939
|
13.061
|
9.796
|
57.714
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
207.459
|
117.477
|
20.668
|
50.741
|
109.287
|
286.076
|
79.727
|
56.007
|
122.400
|
545.841
|
364.366
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.736
|
-1.348
|
1.405
|
1.075
|
1.403
|
-1.834
|
-2.468
|
— | — | — | — | — |
6.069
|
No JSON data available for plots.