Hg_chrom8_TN10mRNA_15315
Organism: Heterodera glycines Gene Locus: chr8:3928109-3929507 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.385 | 1.028 | 1.306 | 1.524 | 1.197 | 1.133 | 1.184 | 1.934 | 0.614 | 0.896 | 0.67 | 2.6 | 1.228 | 0.956 | 1.015 | 1.263 | 0.725 | 0.753 | 1.7 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14462
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.694
|
0.146
|
0.053
|
0.485
|
0.190
|
0.146
|
0.243
|
0.085
|
0.067
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002478
|
3.000
|
1.000
|
Hsc_gene_3175.t1
|
Hsc_gene_12214.t1
|
— |
Q91YT2.1 E3 ubiquitin-protein ligase RNF185 [Mus musculus]
|
CDJ95427.1 Zinc finger domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005783|GO:0006511|GO:0046872|GO:0061630
|
GO:0005575_0.838|GO:0110165_0.829|GO:0008150_0.791|GO:0003674_0.785|GO:0005622_0.748|GO:0009987_0.664|GO:0016020_0.654|GO:0005737_0.633|GO:0043226_0.625|GO:0043229_0.618|GO:0008152_0.609|GO:0043227_0.600|GO:0043231_0.594|GO:0044238_0.589|GO:0043170_0.575|GO:0003824_0.517
|
IPR001841+54-94_54-95+|IPR013083+4-107+|IPR017907+69-78+|IPR018957+54-94+|IPR045103+19-102+
|
SM00184+54-94+
|
PF00097+54-94+Zinc_finger,_C3HC4_type_(RING_finger)
|
G3DSA:3.30.40.10:FF:000062+38-107+E3_ubiquitin-protein_ligase_RNF185
|
PTHR12313+19-102+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-50
|
1.000
|
51-181
|
3jai_jj
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.568
|
20316.690
|
5.042
|
-5.500
|
27.624
|
12.707
|
49.724
|
50.276
|
13.260
|
14.365
|
52.486
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
177.569
|
262.875
|
145.510
|
140.836
|
124.298
|
120.517
|
236.585
|
183.829
|
305.242
|
92.516
|
183.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.083
|
-1.038
|
— | — | — |
0.984
|
0.506
|
0.506
|
— | — | — | — | — |
No JSON data available for plots.