Hg_chrom8_TN10mRNA_15320
Organism: Heterodera glycines Gene Locus: chr8:3979120-3979881 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.55 | 1.376 | 0.323 | 0.816 | 0.69 | 1.365 | 1.057 | 1.183 | 0.789 | 1.439 | 0.269 | 2.785 | 2.465 | 0.91 | 1.449 | 1.014 | 0.873 | 0.986 | 0.455 | 1.044 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14467
|
— | — |
1.667
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
37-63
|
0.979
|
— | — |
0.027
|
— | — |
0.436
|
0.374
|
0.017
|
0.587
|
0.082
|
0.043
|
0.062
|
0.028
|
0.028
|
0.460
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001421
|
2.000
|
3.000
|
Hsc_gene_17664.t1;Hsc_gene_8868.t1;Hsc_gene_8868.t2
|
Hsc_gene_16965.t1;Hsc_gene_17664.t1;Hsc_gene_20657.t1;Hsc_gene_3996.t1;Hsc_gene_6143.t1;Hsc_gene_8868.t1;Hsc_gene_8868.t2;Hsc_gene_936.t1
|
— | — |
KAI3408882.1 hypothetical protein GPALN_007475 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR018289+23-55+
|
— |
PF10551+23-55+MULE_transposase_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
167-169
|
1.000
|
1-166
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.929
|
19166.170
|
9.180
|
7.000
|
17.160
|
15.385
|
40.828
|
59.172
|
11.243
|
5.917
|
47.337
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
salmon
|
89.283
|
34.447
|
40.114
|
27.799
|
31.005
|
39.222
|
14.192
|
34.955
|
48.230
|
271.291
|
175.694
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.460
|
— |
-1.158
|
— | — | — | — | — |
No JSON data available for plots.