Hg_chrom8_TN10mRNA_15321
Organism: Heterodera glycines Gene Locus: chr8:3980447-3983332 Feature type: polypeptideProtein Sequence
Length: 490
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.187 | 1.234 | 0.705 | 0.704 | 0.952 | 1.151 | 1.093 | 1.429 | 1.406 | 1.131 | 0.711 | 0.84 | 1.304 | 0.863 | 1.083 | 0.7 | 0.97 | 0.989 | 0.942 | 0.72 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14468
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.558
|
0.527
|
0.031
|
0.621
|
0.100
|
0.136
|
0.077
|
0.031
|
0.110
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011839
|
1.000
|
1.000
|
Hsc_gene_3102.t1
|
— | — |
Q7ZVB2.1 4-trimethylaminobutyraldehyde dehydrogenase A [Danio rerio]
|
KAF7639047.1 Aldedh domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0016620
|
GO:0008150_0.863|GO:0003674_0.804|GO:0009987_0.716|GO:0003824_0.689|GO:0005575_0.672|GO:0110165_0.664|GO:0016491_0.586|GO:0008152_0.541|GO:0005622_0.529|GO:0016620_0.524|GO:0016903_0.524
|
IPR015590+31-477+|IPR016160+275-286+|IPR016161+28-481+|IPR016162+27-475+|IPR016163+251-446+|IPR029510+247-254+
|
— |
PF00171+31-477+Aldehyde_dehydrogenase_family
|
G3DSA:3.40.309.10:FF:000012+251-446+Betaine_aldehyde_dehydrogenase|G3DSA:3.40.605.10:FF:000007+22-280+NAD/NADP-dependent_betaine_aldehyde_dehydrogenase
|
PTHR11699+15-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-490
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
53544.040
|
7.848
|
9.000
|
22.449
|
11.224
|
43.061
|
56.939
|
12.857
|
9.592
|
52.449
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
3748.456
|
1943.873
|
1655.535
|
1678.235
|
1888.641
|
1612.238
|
1747.897
|
1608.178
|
1658.460
|
10605.177
|
6770.870
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.461
|
-0.349
|
0.128
|
0.138
|
-0.214
|
— | — |
0.263
|
— | — | — | — | — |
No JSON data available for plots.