Hg_chrom8_TN10mRNA_15322
Organism: Heterodera glycines Gene Locus: chr8:3983654-3988175 Feature type: polypeptideProtein Sequence
Length: 494
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.083 | 0.8 | 0.847 | 1.187 | 1.012 | 0.675 | 1.012 | 2.024 | 0.855 | 1.04 | 0.889 | 1.072 | 1.237 | 0.973 | 1.363 | 0.896 | 0.896 | 0.92 | 1.246 | 0.893 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14469
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.929
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
REVKRRR,KRRRQRRKG
|
75-95
|
0.962
|
61-97
|
0.997
|
— | — |
0.000
|
— | — |
0.136
|
0.044
|
0.009
|
0.258
|
0.347
|
0.656
|
0.551
|
0.003
|
0.580
|
0.275
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011840
|
1.000
|
1.000
|
Hsc_gene_3103.t1
|
Hsc_gene_3103.t1
|
— |
P43157.1 Cathepsin B-like cysteine proteinase [Schistosoma japonicum]
|
KAI6181491.1 Cathepsin B [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008234
|
GO:0005575_0.770|GO:0110165_0.767|GO:0008150_0.720|GO:0003674_0.628|GO:0016020_0.574|GO:0005622_0.555|GO:0009987_0.531|GO:0005737_0.521
|
IPR000169+227-238+|IPR000668+205-336_205-487_395-490+|IPR013128+168-478+|IPR038765+135-481+
|
SM00645+205-487+
|
PF00112+205-336_395-490+Papain_family_cysteine_protease
|
— |
PTHR12411+168-478+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-53
|
1.000
|
54-494
|
1sp4_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
54814.410
|
8.437
|
19.000
|
27.328
|
13.158
|
45.142
|
54.858
|
16.599
|
10.729
|
52.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
715.596
|
892.451
|
1023.926
|
882.450
|
580.153
|
868.706
|
453.997
|
1006.658
|
121.461
|
899.009
|
565.774
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.153
|
— |
-0.636
|
0.598
|
-0.927
|
— |
-1.005
|
-3.008
|
— | — | — | — |
No JSON data available for plots.