Hg_chrom8_TN10mRNA_15323
Organism: Heterodera glycines Gene Locus: chr8:3988565-3991240 Feature type: polypeptideProtein Sequence
Length: 602
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 0.889 | 1.299 | 0.916 | 1.357 | 1.193 | 0.949 | 1.412 | 0.812 | 1.145 | 0.78 | 1.563 | 1.523 | 0.799 | 1.729 | 0.664 | 0.599 | 0.78 | 1.661 | 0.635 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14470
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KMRGKRRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.356
|
0.025
|
0.455
|
0.108
|
0.119
|
0.162
|
0.032
|
0.118
|
0.136
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011841
|
1.000
|
1.000
|
Hsc_gene_3104.t1
|
Hsc_gene_3104.t1
|
— |
Q9NVD3.1 SET domain-containing protein 4 [Homo sapiens]
|
KAH7714615.1 Protein SET-29 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.951|GO:0003674_0.891|GO:0009987_0.882|GO:0003824_0.760|GO:0071840_0.750|GO:0016740_0.697|GO:0140096_0.690|GO:0008168_0.655|GO:0008757_0.655|GO:0016741_0.655|GO:0008170_0.650|GO:0008276_0.650|GO:0016278_0.650|GO:0016279_0.650|GO:0005575_0.612|GO:0110165_0.607|GO:0016043_0.588|GO:0005622_0.542|GO:0006325_0.527|GO:0006338_0.527|GO:0016020_0.504|GO:0042054_0.502|GO:0140993_0.502
|
IPR001214+33-387_49-387+|IPR046341+44-405+|IPR050600+8-565+
|
— |
PF00856+49-387+SET_domain
|
— |
PTHR13271+8-565+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
530-602
|
1.000
|
1-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.518
|
69072.050
|
6.368
|
-1.500
|
31.728
|
12.625
|
48.505
|
51.495
|
16.445
|
15.282
|
46.179
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
409.586
|
788.063
|
607.865
|
455.615
|
285.008
|
277.669
|
611.271
|
314.666
|
204.469
|
386.030
|
308.218
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.605
|
-0.928
|
-0.306
|
-0.708
|
— |
1.150
|
— |
1.101
|
— | — | — | — | — |
No JSON data available for plots.