Hg_chrom8_TN10mRNA_15324
Organism: Heterodera glycines Gene Locus: chr8:3991704-3994452 Feature type: polypeptideProtein Sequence
Length: 557
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.898 | 1.253 | 1.338 | 0.557 | 1.586 | 1.335 | 0.705 | 0.898 | 0.918 | 0.946 | 0.843 | 1.267 | 1.247 | 1.036 | 1.392 | 0.692 | 0.971 | 0.952 | 0.552 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14471
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKKR,KKLEEDKTKGTEEDKQNKR,KRTDKQEKQTLRRTRRRTS,RRTSTTNATAATEDDGRKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.846
|
0.112
|
0.023
|
0.321
|
0.054
|
0.009
|
0.028
|
0.048
|
0.103
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011842
|
1.000
|
1.000
|
Hsc_gene_3105.t1
|
Hsc_gene_3105.t1
|
— | — |
KHN84949.1 Phytanoyl-CoA hydroxylase-interacting protein-like [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.932|GO:0005622_0.846|GO:0005737_0.723|GO:0016020_0.583|GO:0043226_0.532|GO:0043229_0.501
|
IPR042868+29-259+|IPR045545+39-256+
|
— |
PF19281+39-256+Phytanoyl-CoA_hydroxylase-interacting_protein_C-terminus
|
— |
PTHR15698+29-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
246-351;408-557
|
2.000
|
1-245;352-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
62909.250
|
4.738
|
-20.000
|
31.059
|
9.156
|
52.424
|
47.576
|
14.183
|
16.876
|
50.449
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
darkorange
|
957.794
|
2094.334
|
1043.575
|
778.856
|
835.121
|
873.895
|
1406.570
|
849.442
|
815.932
|
622.728
|
705.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.236
|
-1.564
|
-0.313
|
— | — |
0.697
|
— |
0.869
|
— | — | — | — | — |
No JSON data available for plots.