SCN Proteipedia

Hg_chrom8_TN10mRNA_15327

Organism: Heterodera glycines Gene Locus: chr8:3998365-4009006 Feature type: polypeptide

Protein Sequence

Length: 2,423

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.749	1.046	0.938	0.327	1.348	1.206	0.629	1.3	1.321	1.272	0.988	1.505	1.135	0.857	1.095	0.89	0.995	1.126	1.175	0.789	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14474	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.865

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	lysosome_vacuole	—	EAKQKKL,KKLLRLEENRRSRQK,RRRNNWSWDRMKKHRQ	—	—	—	—	—	—	0.000	—	—	0.134	0.564	0.062	0.317	0.419	0.651	0.515	0.019	0.394	0.108

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000177	10.000	2.000	Hsc_gene_3110.t1;Hsc_gene_3110.t2	Hsc_gene_3109.t1;Hsc_gene_3110.t1;Hsc_gene_3110.t2;Hsc_gene_6757.t1	—	A1Z713.2 Intermembrane lipid transfer protein Vps13 [Drosophila melanogaster]	KAH7722313.1 vacuolar protein sorting-associated protein 13C-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.920\|GO:0005575_0.803\|GO:0110165_0.800\|GO:0005622_0.723\|GO:0016020_0.699\|GO:0043226_0.682\|GO:0005737_0.672\|GO:0009987_0.645\|GO:0043229_0.634\|GO:0043227_0.609\|GO:0071944_0.607\|GO:0005886_0.591\|GO:0008152_0.575\|GO:0043231_0.557	IPR009543+1225-1752+\|IPR026847+898-2380+\|IPR026854+3-115+\|IPR031642+562-784+\|IPR031645+2008-2183+\|IPR031646+136-371+\|IPR049424+2276-2384+	—	PF06650+1225-1752+Vacuolar-sorting_associated_protein_13,_adaptor_binding_domain\|PF12624+3-115+VPS13-like,_N-terminal\|PF16908+136-371+Vacuolar_sorting-associated_protein_13,_extended-chorein\|PF16909+2008-2183+Vacuolar-sorting-associated_13_protein,_DH-like_domain\|PF16910+562-784+VPS13,_central_RBG_modules\|PF21679+2276-2384+Intermembrane_lipid_transfer_protein_VPS13,_C-terminal	—	PTHR16166+898-2380+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1076-1121	2.000	1-1075;1122-2423	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.536	275353.620	6.481	-1.500	27.734	10.896	49.236	50.764	14.486	13.248	46.513

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	4582.535	8650.240	3956.516	3112.283	3567.833	4382.410	4346.603	5970.821	3065.874	5004.171	4173.472

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.357	-1.612	-0.238	0.165	0.311	—	0.343	-0.316	—	—	—	—	—

No JSON data available for plots.

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