Hg_chrom8_TN10mRNA_15329
Organism: Heterodera glycines Gene Locus: chr8:4009141-4012489 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 1.038 | 0.954 | 0.724 | 1.225 | 1.413 | 0.875 | 1.575 | 1.05 | 0.958 | 0.915 | 1.081 | 1.385 | 0.656 | 0.911 | 1.125 | 0.688 | 1.511 | 1.413 | 0.695 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14475
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.742
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.426
|
0.324
|
0.032
|
0.712
|
0.209
|
0.256
|
0.148
|
0.042
|
0.082
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011844
|
1.000
|
1.000
|
Hsc_gene_3123.t1
|
Hsc_gene_3121.t1;Hsc_gene_3123.t1
|
— |
Q148L6.1 Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Bos taurus]
|
KAH7725547.1 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase-like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166
|
GO:0003674_0.639|GO:0008150_0.600|GO:0003824_0.537|GO:0005575_0.535|GO:0110165_0.529
|
IPR000683+13-125+|IPR036291+12-176+|IPR050984+8-369+
|
— |
PF01408+13-125+Oxidoreductase_family,_NAD-binding_Rossmann_fold|PF22725+151-265+GFO/IDH/MocA_C-terminal_domain
|
— |
PTHR22604+8-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.584
|
42710.330
|
6.232
|
-2.000
|
26.247
|
12.336
|
48.294
|
51.706
|
13.648
|
12.598
|
50.656
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1926.960
|
1566.470
|
1568.880
|
1780.312
|
2343.425
|
2112.882
|
1837.312
|
2062.237
|
1600.652
|
2253.144
|
1973.505
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.227
|
— |
0.291
|
0.365
|
— |
-0.191
|
— | — | — | — | — | — | — |
No JSON data available for plots.