Hg_chrom8_TN10mRNA_15331
Organism: Heterodera glycines Gene Locus: chr8:4014853-4016176 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.833 | 0.53 | 0.592 | 1.236 | 0.814 | 2.172 | 2.249 | 0.489 | 0.724 | 0.528 | 0.938 | 1.341 | 0.362 | 2.756 | 0.931 | 0.372 | 0.748 | 0.79 | 0.752 | 0.383 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14477
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.673
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
GKAGEPGKSGQNGGRGERGEAGEVGPKGQPGKEGTPGERGKDGTKAMPGQPGPKGRPGPPGKKGAPGMKGRNGEQGAPGAQGPPGKPG
|
— | — | — | — | — | — |
0.178
|
— | — |
0.046
|
0.087
|
0.007
|
0.102
|
0.505
|
0.255
|
0.265
|
0.002
|
0.726
|
0.366
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011846
|
1.000
|
1.000
|
Hsc_gene_3125.t1
|
Hsc_gene_3125.t1
|
— | — |
KAI1733265.1 cuticle collagen 10 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+7-59_14-58+|IPR008160+233-287+|IPR050632+15-299+
|
SM01088+7-59+
|
PF01391+233-287+Collagen_triple_helix_repeat_(20_copies)|PF01484+14-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+15-299+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
101-307
|
1.000
|
1-100
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.968
|
31455.640
|
8.704
|
9.500
|
19.870
|
4.560
|
37.785
|
62.215
|
11.726
|
8.143
|
61.889
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
238.529
|
804.976
|
380.307
|
99.194
|
194.167
|
254.831
|
56.930
|
148.322
|
157.877
|
198.133
|
180.880
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.312
|
-3.158
|
-1.830
|
0.936
|
0.409
|
-2.156
|
-0.890
|
-1.241
|
— | — | — | — | — |
No JSON data available for plots.