Hg_chrom8_TN10mRNA_15334
Organism: Heterodera glycines Gene Locus: chr8:4022207-4035427 Feature type: polypeptideProtein Sequence
Length: 827
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.181 | 1.265 | 0.594 | 0.334 | 1.028 | 2.666 | 0.878 | 1.632 | 0.591 | 0.899 | 0.513 | 1.494 | 0.47 | 1.139 | 0.814 | 1.468 | 1.249 | 0.953 | 0.465 | 0.391 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14479
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_3128
|
— |
28-Not_Clustered
|
0.535
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
RRVTTNSWEDERERKI
|
— | — | — | — | — |
0.682
|
0.241
|
0.000
|
— |
0.879
|
0.099
|
0.011
|
0.347
|
0.052
|
0.036
|
0.041
|
0.028
|
0.050
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002480
|
2.000
|
2.000
|
Hsc_gene_3127.t1;Hsc_gene_3128.t1
|
— | — | — |
KAI1713535.1 homeobox KN domain-containing protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0006355
|
— |
IPR001356+209-248+|IPR008422+203-242+|IPR009057+195-256+
|
— |
PF05920+203-242+Homeobox_KN_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-448;501-827
|
1.000
|
449-500
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
88525.650
|
6.292
|
-3.500
|
20.073
|
6.892
|
53.809
|
46.191
|
10.641
|
9.432
|
57.316
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
3935.542
|
11318.215
|
4593.002
|
4477.659
|
2963.188
|
2976.257
|
3609.790
|
6525.705
|
1494.091
|
2423.499
|
2025.181
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.531
|
-1.475
|
— |
-0.628
|
— |
0.289
|
1.035
|
-0.715
|
— | — | — | — | — |