Hg_chrom8_TN10mRNA_15338
Organism: Heterodera glycines Gene Locus: chr8:4050346-4052703 Feature type: polypeptideProtein Sequence
Length: 227
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.922 | 1.127 | 0.881 | 0.456 | 1.028 | 1.694 | 0.892 | 1.322 | 0.979 | 0.952 | 0.667 | 3.628 | 1.591 | 0.339 | 1.259 | 0.692 | 0.939 | 1.201 | 0.678 | 0.907 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14483
|
— | — |
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.537
|
0.187
|
0.037
|
0.710
|
0.209
|
0.057
|
0.119
|
0.013
|
0.049
|
0.057
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004719
|
2.000
|
1.000
|
Hsc_gene_3133.t1
|
Hsc_gene_3133.t1
|
— |
P28024.2 Proteasome subunit beta type-4 [Xenopus laevis]
|
KAF7638769.1 Proteasome subunit beta [Meloidogyne graminicola]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0051603
|
GO:0005575_0.871|GO:0110165_0.855|GO:0005622_0.794|GO:0016020_0.770|GO:0043226_0.729|GO:0043229_0.719|GO:0043227_0.701|GO:0043231_0.682|GO:0008150_0.635|GO:0032991_0.631|GO:0005634_0.603|GO:0005737_0.598|GO:1902494_0.567|GO:0140535_0.554|GO:1905368_0.548|GO:1905369_0.547|GO:0000502_0.546
|
IPR001353+4-199+|IPR016295+1-226+|IPR029055+2-225_3-220+|IPR050115+5-188+
|
— |
PF00227+4-199+Proteasome_subunit
|
— |
PTHR11599+5-188+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-227
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.546
|
25770.510
|
7.040
|
2.000
|
24.229
|
12.335
|
46.256
|
53.744
|
13.216
|
11.013
|
46.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
3257.576
|
1861.715
|
1946.759
|
3226.823
|
3251.949
|
2916.528
|
2006.245
|
2137.328
|
3312.175
|
5262.508
|
4426.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.165
|
0.656
|
0.837
|
— | — |
-0.530
|
-0.554
|
— | — | — | — | — | — |
No JSON data available for plots.