Hg_chrom8_TN10mRNA_15339
Organism: Heterodera glycines Gene Locus: chr8:4058487-4063296 Feature type: polypeptideProtein Sequence
Length: 622
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 1.009 | 0.877 | 0.277 | 0.938 | 1.855 | 0.823 | 2.251 | 0.679 | 0.847 | 0.633 | 1.702 | 0.804 | 1.206 | 1.641 | 1.332 | 0.896 | 0.853 | 0.618 | 0.851 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14484
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.336
|
0.323
|
0.007
|
0.642
|
0.117
|
0.271
|
0.170
|
0.030
|
0.448
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004720
|
2.000
|
1.000
|
Hsc_gene_3134.t1
|
Hsc_gene_3134.t1
|
— |
Q4KTY1.1 Serine/threonine-protein kinase H1 homolog [Pinctada fucata]
|
KAI1713545.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.787|GO:0005575_0.765|GO:0110165_0.760|GO:0003674_0.757|GO:0003824_0.696|GO:0140096_0.696|GO:0009987_0.695|GO:0016740_0.665|GO:0065007_0.663|GO:0050789_0.659|GO:0005622_0.650|GO:0050794_0.650|GO:0004672_0.648|GO:0016301_0.648|GO:0016772_0.648|GO:0016773_0.648|GO:0050896_0.553|GO:0004674_0.532|GO:0016020_0.514
|
IPR000719+235-488+|IPR008271+349-361+|IPR011009+234-502+|IPR017441+241-264+
|
SM00220+235-488+
|
PF00069+235-488+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000571+227-501+Maternal_embryonic_leucine_zipper_kinase
|
PTHR24347+93-580+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-217;465-622
|
1.000
|
218-464
|
9fqr_G9
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.897
|
69528.540
|
9.554
|
25.000
|
27.170
|
11.093
|
53.537
|
46.463
|
16.720
|
10.450
|
51.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
321.392
|
567.955
|
690.414
|
544.635
|
190.214
|
490.094
|
183.151
|
602.673
|
42.662
|
148.165
|
102.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.197
|
-0.234
|
-1.552
|
1.381
|
-1.412
|
— |
-1.578
|
— | — | — | — | — |
No JSON data available for plots.