Hg_chrom8_TN10mRNA_15340
Organism: Heterodera glycines Gene Locus: chr8:4064147-4069316 Feature type: polypeptideProtein Sequence
Length: 887
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.101 | 0.891 | 0.963 | 0.389 | 1.203 | 1.243 | 0.926 | 1.578 | 0.777 | 1.31 | 0.478 | 1.326 | 1.19 | 0.997 | 1.565 | 1.369 | 0.758 | 0.854 | 0.26 | 0.398 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14485
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRR
|
— | — | — | — | — |
0.682
|
0.241
|
0.000
|
— |
0.205
|
0.383
|
0.092
|
0.301
|
0.293
|
0.292
|
0.455
|
0.041
|
0.240
|
0.748
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002482
|
2.000
|
2.000
|
Hsc_gene_3135.t1;Hsc_gene_3135.t2
|
— | — |
Q8BRK9.2 Alpha-mannosidase 2x [Mus musculus]
|
KAI1717676.1 alpha mannosidase middle domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004559|GO:0005975|GO:0006013|GO:0030246
|
GO:0005575_0.770|GO:0110165_0.762|GO:0008150_0.750|GO:0003674_0.746|GO:0005622_0.672|GO:0016020_0.663|GO:0043226_0.619|GO:0043229_0.600|GO:0043227_0.579|GO:0003824_0.573|GO:0005737_0.571|GO:0016787_0.547|GO:0043231_0.547|GO:0004553_0.519|GO:0016798_0.519|GO:0015923_0.515|GO:0071944_0.508|GO:0008152_0.505
|
IPR011013+414-886+|IPR011682+467-692+|IPR013780+409-440+|IPR015341+243-309_277-327+|IPR028995+270-329+|IPR037094+278-332+|IPR050843+270-886+
|
SM00872+243-309+
|
PF07748+467-692+Glycosyl_hydrolases_family_38_C-terminal_domain|PF09261+277-327+Alpha_mannosidase_middle_domain
|
— |
PTHR11607+270-886+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-164
|
1.000
|
165-887
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.725
|
97011.800
|
6.453
|
-1.000
|
26.494
|
9.132
|
49.380
|
50.620
|
13.980
|
12.514
|
52.537
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
1513.591
|
1237.156
|
1405.981
|
1991.731
|
2284.639
|
1876.887
|
2037.171
|
1780.440
|
302.301
|
1664.983
|
1080.976
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.550
|
0.611
|
0.166
|
-0.269
|
— | — |
0.338
|
-2.596
|
2.915
|
— | — | — |