Hg_chrom8_TN10mRNA_15343
Organism: Heterodera glycines Gene Locus: chr8:4084706-4086492 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.102 | 0.734 | 0.766 | 0.544 | 0.614 | 0.27 | 0.815 | 0.789 | 0.936 | 1.067 | 1.675 | 0.929 | 1.023 | 1.215 | 2.9 | 0.526 | 0.69 | 1.276 | 0.0 | 0.929 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14488
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRNRPPLSIARIVRYVKK,KRFNAVVLKRLFMSKRNRP,RRKAREAEKHFGPPPGVPGSHAKPLVRAKGRKFERARGRRKSRGYKN
|
44-65
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.511
|
0.100
|
0.088
|
0.476
|
0.426
|
0.079
|
0.084
|
0.003
|
0.121
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011849
|
1.000
|
1.000
|
Hsc_gene_3161.t1
|
Hsc_gene_3161.t1
|
— |
Q4GXG7.1 Large ribosomal subunit protein eL18 [Timarcha balearica]
|
KAI3416140.1 60S ribosomal protein L18 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.904|GO:0110165_0.904|GO:0005622_0.842|GO:0005737_0.752|GO:0043226_0.724|GO:0043229_0.713|GO:0005829_0.592|GO:0043228_0.590|GO:0043232_0.590|GO:0008150_0.544|GO:0003674_0.534
|
IPR000039+1-190+|IPR021131+2-190+|IPR021132+51-68+|IPR036227+19-141+
|
— |
PF17135+2-190+Ribosomal_protein_60S_L18_and_50S_L18e
|
G3DSA:3.100.10.10:FF:000001+1-190+60S_ribosomal_protein_L18
|
PTHR10934+1-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
141-190
|
1.000
|
1-140
|
4v6w_CQ
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.963
|
21609.510
|
11.764
|
34.500
|
34.737
|
8.421
|
46.842
|
53.158
|
26.842
|
7.895
|
47.895
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
7827.193
|
2178.607
|
5531.854
|
11347.476
|
11807.274
|
8867.774
|
4967.249
|
2628.560
|
10476.699
|
8638.149
|
9426.099
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.116
|
2.244
|
1.144
|
— |
-0.398
|
-0.827
|
-1.863
|
1.061
|
— | — | — | — | — |
No JSON data available for plots.