Hg_chrom8_TN10mRNA_15347
Organism: Heterodera glycines Gene Locus: chr8:4090329-4091965 Feature type: polypeptideProtein Sequence
Length: 252
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 0.923 | 0.866 | 1.232 | 0.728 | 1.018 | 0.567 | 0.595 | 1.146 | 2.091 | 0.842 | 0.233 | 2.646 | 0.992 | 0.81 | 1.134 | 1.041 | 0.842 | 1.221 | 0.467 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14492
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.643
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.149
|
0.128
|
0.007
|
0.168
|
0.721
|
0.603
|
0.796
|
0.058
|
0.262
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011851
|
1.000
|
1.000
|
Hsc_gene_3158.t1
|
Hsc_gene_3158.t1
|
— |
Q28CH8.1 Protein YIPF6 [Xenopus tropicalis]
|
KAF7639931.1 Protein YIPF [Meloidogyne graminicola]
|
No
|
-0.190
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888
|
GO:0005575_0.927|GO:0110165_0.924|GO:0016020_0.879|GO:0005886_0.863|GO:0071944_0.863|GO:0005622_0.822|GO:0005737_0.801|GO:0043226_0.794|GO:0008150_0.793|GO:0043227_0.791|GO:0005773_0.783|GO:0043229_0.783|GO:0043231_0.783|GO:0012505_0.771|GO:0009987_0.740|GO:0003674_0.557|GO:0031984_0.525|GO:0051179_0.522|GO:0006810_0.520|GO:0051234_0.520|GO:0032501_0.506|GO:0005794_0.505
|
IPR045231+22-137+
|
— | — | — |
PTHR21236+22-137+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-252
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.708
|
28501.220
|
7.481
|
2.500
|
19.841
|
13.889
|
42.063
|
57.937
|
10.714
|
9.127
|
47.222
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1310.668
|
600.538
|
985.857
|
1283.873
|
1505.442
|
1652.674
|
1419.840
|
1347.490
|
1188.584
|
1544.339
|
1391.873
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.486
|
0.960
|
0.490
|
0.198
|
0.149
|
-0.210
|
-0.400
|
— | — | — | — | — | — |
No JSON data available for plots.