Hg_chrom8_TN10mRNA_15348
Organism: Heterodera glycines Gene Locus: chr8:4093233-4094961 Feature type: polypeptideProtein Sequence
Length: 391
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.714 | 0.833 | 1.349 | 0.265 | 0.426 | 0.984 | 0.974 | 1.279 | 1.08 | 1.694 | 0.93 | 1.053 | 1.989 | 1.18 | 0.94 | 1.133 | 0.503 | 1.201 | 0.197 | 0.752 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14493
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.191
|
0.332
|
0.016
|
0.117
|
0.842
|
0.470
|
0.272
|
0.008
|
0.148
|
0.144
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011852
|
1.000
|
1.000
|
Hsc_gene_3157.t1
|
Hsc_gene_3157.t1
|
— |
Q5ZIF1.1 Adipocyte plasma membrane-associated protein [Gallus gallus]
|
KAI1727858.1 strictosidine synthase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009058|GO:0016844
|
GO:0005575_0.792|GO:0110165_0.792|GO:0016020_0.681|GO:0005622_0.644|GO:0005737_0.606|GO:0008150_0.587|GO:0043226_0.553|GO:0043229_0.543|GO:0043227_0.532|GO:0043231_0.530
|
IPR011042+44-391+|IPR018119+169-256+
|
— |
PF03088+169-256+Strictosidine_synthase|PF20067+40-78+Strictosidine_synthase-like,_N-terminal
|
— |
PTHR10426+14-385+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-391
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.837
|
43134.790
|
8.607
|
8.000
|
23.274
|
12.532
|
41.688
|
58.312
|
13.299
|
9.974
|
51.151
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkorange
|
1286.907
|
1102.741
|
1207.285
|
1415.375
|
1965.717
|
1833.228
|
2574.930
|
1108.334
|
163.490
|
1304.746
|
815.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.223
|
0.338
|
0.442
|
— |
0.501
|
-0.830
|
1.359
|
-3.109
|
— | — | — | — |
No JSON data available for plots.