Hg_chrom8_TN10mRNA_15350
Organism: Heterodera glycines Gene Locus: chr8:4098966-4106148 Feature type: polypeptideProtein Sequence
Length: 1,121
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.83 | 1.1 | 0.714 | 0.892 | 0.669 | 1.121 | 1.073 | 1.963 | 1.051 | 1.073 | 0.554 | 0.42 | 1.635 | 1.132 | 1.748 | 1.402 | 0.848 | 0.703 | 1.304 | 0.472 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14495
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.967
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— |
KRRPTLSAQLEPKKKQKY,RRRWWHCWRSGCEERRRQR,RRWWHCWRSGCEERRRQRR
|
— | — |
69-91
|
0.988
|
— | — |
0.000
|
— | — |
0.091
|
0.087
|
0.011
|
0.204
|
0.521
|
0.369
|
0.647
|
0.007
|
0.485
|
0.026
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011854
|
1.000
|
1.000
|
Hsc_gene_3155.t1
|
— | — |
Q8BQQ1.1 Palmitoyltransferase ZDHHC14 [Mus musculus]
|
KAI1713546.1 DHHC palmitoyltransferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016409
|
GO:0008150_0.892|GO:0005575_0.842|GO:0110165_0.842|GO:0016020_0.793|GO:0009987_0.776|GO:0071944_0.752|GO:0005886_0.732|GO:0005622_0.669|GO:0043226_0.633|GO:0003674_0.625|GO:0043229_0.614|GO:0065007_0.592|GO:0043227_0.574|GO:0043231_0.557|GO:0005737_0.550|GO:0050789_0.544
|
IPR001594+683-808+
|
— |
PF01529+683-808+DHHC_palmitoyltransferase
|
— |
PTHR22883+590-869+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9;280-489;881-1121
|
2.000
|
10-279;490-880
|
8hf3_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.935
|
124255.280
|
10.194
|
70.000
|
24.086
|
13.113
|
48.171
|
51.829
|
16.146
|
7.939
|
52.899
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
2516.114
|
4847.977
|
3230.757
|
2198.960
|
1809.518
|
3725.187
|
3171.324
|
3593.524
|
1083.328
|
1729.037
|
1452.304
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.815
|
-1.278
|
-0.446
|
-0.313
|
1.057
|
-0.222
|
— | — | — | — | — | — | — |
No JSON data available for plots.