Hg_chrom8_TN10mRNA_15352
Organism: Heterodera glycines Gene Locus: chr8:4110787-4114931 Feature type: polypeptideProtein Sequence
Length: 459
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 0.76 | 1.228 | 1.202 | 0.98 | 0.67 | 0.726 | 1.634 | 0.92 | 1.354 | 0.627 | 1.922 | 1.331 | 0.88 | 1.556 | 0.934 | 0.679 | 1.155 | 0.838 | 0.769 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14497
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.966
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRRS
|
6-26
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.102
|
0.849
|
0.012
|
0.284
|
0.040
|
0.147
|
0.053
|
0.021
|
0.040
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011856
|
1.000
|
1.000
|
Hsc_gene_3153.t1
|
Hsc_gene_3153.t1
|
— |
B7ZMP1.1 Xaa-Pro aminopeptidase 3 [Mus musculus]
|
KAH7728448.1 metallopeptidase family M24 containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0030145|GO:0070006
|
GO:0005575_0.764|GO:0110165_0.753|GO:0008150_0.698|GO:0003674_0.679|GO:0005622_0.643|GO:0005737_0.619|GO:0003824_0.588|GO:0016020_0.554|GO:0009987_0.524|GO:0043226_0.506
|
IPR000994+204-436+|IPR007865+25-160_30-146+|IPR029149+26-194_26-197+|IPR036005+196-459_198-457+
|
SM01011+25-160+
|
PF00557+204-436+Metallopeptidase_family_M24|PF05195+30-146+Aminopeptidase_P,_N-terminal_domain
|
— |
PTHR43226+25-458+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-459
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
51650.330
|
6.870
|
3.500
|
27.669
|
11.765
|
44.227
|
55.773
|
15.033
|
12.636
|
50.545
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkgrey
|
2071.673
|
2731.452
|
1950.551
|
1930.151
|
1809.355
|
1352.251
|
1644.987
|
1659.914
|
730.662
|
3611.077
|
2376.613
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.716
|
-0.638
|
0.094
|
-0.125
|
-0.405
|
0.293
|
— | — |
-2.413
|
— | — | — | — |
No JSON data available for plots.