Hg_chrom8_TN10mRNA_15354
Organism: Heterodera glycines Gene Locus: chr8:4122066-4122997 Feature type: polypeptideProtein Sequence
Length: 179
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.52 | 0.909 | 0.508 | 0.578 | 0.931 | 0.859 | 0.333 | 0.838 | 0.869 | 2.34 | 1.016 | 2.3 | 1.397 | 0.752 | 0.342 | 1.117 | 1.191 | 1.439 | 0.859 | 1.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14499
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKVLAVTNVLDKMKKM
|
— | — | — | — | — | — |
0.000
|
— | — |
0.252
|
0.229
|
0.035
|
0.158
|
0.924
|
0.326
|
0.641
|
0.016
|
0.183
|
0.149
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001231
|
3.000
|
2.000
|
Hsc_gene_16970.t1;Hsc_gene_3151.t1
|
Hsc_gene_16970.t1;Hsc_gene_25627.t1;Hsc_gene_2903.t1;Hsc_gene_3151.t1
|
— |
Q6FMU3.1 Protein YOP1 [Nakaseomyces glabratus CBS 138]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.887|GO:0005575_0.739|GO:0110165_0.739|GO:0016020_0.654|GO:0005886_0.647|GO:0071944_0.647|GO:0005622_0.599|GO:0005737_0.599|GO:0005773_0.567|GO:0043226_0.567|GO:0043227_0.567|GO:0043229_0.567|GO:0043231_0.567|GO:0009987_0.560|GO:0012505_0.558|GO:0050896_0.554
|
IPR004345+86-173_89-164+
|
— |
PF03134+89-164+TB2/DP1,_HVA22_family
|
— |
PTHR12300+86-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-179
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.559
|
20479.220
|
7.209
|
1.500
|
18.436
|
13.408
|
40.782
|
59.218
|
10.056
|
8.380
|
44.134
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
3793.753
|
124.390
|
38.921
|
110.294
|
342.207
|
3910.972
|
208.200
|
4102.993
|
13.043
|
13273.645
|
7590.530
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.903
|
-0.310
|
1.609
|
1.603
|
3.529
|
-4.221
|
— |
-4.152
|
-10.105
|
— |
-5.205
|
— |
4.784
|
No JSON data available for plots.