SCN Proteipedia

Hg_chrom8_TN10mRNA_15355

Organism: Heterodera glycines Gene Locus: chr8:4127954-4133753 Feature type: polypeptide

Protein Sequence

Length: 420

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.329	0.941	0.649	0.411	0.476	2.381	0.539	1.548	0.741	1.577	0.541	1.821	0.265	1.419	1.263	1.735	1.21	0.433	0.0	0.42	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14500	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.991

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.758	0.218	0.007	0.462	0.040	0.043	0.089	0.017	0.088	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011857	1.000	1.000	Hsc_gene_3149.t2	Hsc_gene_3149.t1;Hsc_gene_3149.t2;Hsc_gene_3149.t3	—	G5EG44.1 Mad-like protein 1 [Caenorhabditis elegans]	KAI1716906.1 helix-loop-helix DNA-binding domain-containing protein [Ditylenchus destructor]	No	-0.590

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0046983	GO:0005575_0.868\|GO:0110165_0.867\|GO:0008150_0.853\|GO:0065007_0.842\|GO:0050789_0.838\|GO:0009987_0.830\|GO:0050794_0.830\|GO:0005622_0.809\|GO:0016020_0.802\|GO:0043226_0.777\|GO:0043229_0.763\|GO:0043227_0.714\|GO:0043231_0.701\|GO:0005634_0.669\|GO:0008152_0.645\|GO:0019222_0.645\|GO:0031323_0.645\|GO:0044237_0.645\|GO:0044238_0.643\|GO:0080090_0.643\|GO:0043170_0.633\|GO:0060255_0.633\|GO:0009058_0.618\|GO:0009889_0.618\|GO:0031326_0.618\|GO:0044249_0.618\|GO:0009059_0.617\|GO:0010467_0.617\|GO:0010468_0.617\|GO:0010556_0.617\|GO:0006139_0.609\|GO:0019219_0.609\|GO:0034654_0.602\|GO:0006351_0.601\|GO:0016070_0.601\|GO:0032774_0.601\|GO:0051252_0.601\|GO:0090304_0.601\|GO:0141187_0.601\|GO:0006355_0.596\|GO:2001141_0.596	IPR011598+210-262_212-261_216-268+\|IPR036638+208-284_211-299+	SM00353+216-268+	PF00010+212-261+Helix-loop-helix_DNA-binding_domain	—	PTHR11969+31-312+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;90-378	2.000	26-89;379-420	1nlw_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.940	45186.140	10.361	20.500	19.286	5.476	52.143	47.857	12.857	6.429	54.524

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkturquoise	2077.251	4404.498	3305.303	1227.993	753.730	1721.181	2117.677	2908.518	1942.035	1466.860	1670.506

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.641	-1.980	-1.321	-0.736	1.205	0.309	0.661	—	—	—	—	—	—

No JSON data available for plots.

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