SCN Proteipedia

Hg_chrom8_TN10mRNA_15356

Organism: Heterodera glycines Gene Locus: chr8:4135314-4137007 Feature type: polypeptide

Protein Sequence

Length: 349

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.666	1.199	0.729	0.198	1.098	2.278	1.092	0.143	1.146	0.968	0.521	2.023	0.876	0.937	0.819	0.901	0.986	0.912	0.0	0.421	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14501	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.609	0.216	0.004	0.740	0.135	0.096	0.159	0.009	0.041	0.073

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002477	2.000	2.000	Hsc_gene_3148.t1;Hsc_gene_3168.t1	Hsc_gene_3148.t1	—	A3KMV2.1 UV excision repair protein RAD23 homolog A [Bos taurus]	KAI3416146.1 UV excision repair protein rad23 [Globodera pallida]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003684\|GO:0005515\|GO:0006289\|GO:0043161	GO:0005575_0.819\|GO:0110165_0.811\|GO:0008150_0.800\|GO:0005622_0.728\|GO:0003674_0.678\|GO:0016020_0.665\|GO:0043226_0.650\|GO:0005737_0.643\|GO:0043229_0.635\|GO:0043227_0.573\|GO:0043231_0.555\|GO:0005488_0.523	IPR000626+2-75_2-79_5-74+\|IPR004806+4-334_234-256_288-304_305-319_320-335+\|IPR006636+204-249+\|IPR009060+128-176_283-335+\|IPR015360+208-263+\|IPR015940+133-173_135-170_135-172_291-332_294-331_295-329+\|IPR029071+4-97+\|IPR036353+200-263_207-267+	SM00165+135-172_294-331+\|SM00213+2-75+\|SM00727+204-249+	PF00240+5-74+Ubiquitin_family\|PF00627+135-170_295-329+UBA/TS-N_domain\|PF09280+208-263+XPC-binding_domain	G3DSA:1.10.8.10:FF:000002+286-333+UV_excision_repair_protein_RAD23_homolog\|G3DSA:1.10.8.10:FF:000003+131-175+UV_excision_repair_protein_RAD23_homolog\|G3DSA:3.10.20.90:FF:000254+3-79+UV_excision_repair_protein_Rad23	PTHR10621+5-329+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	80-144;340-349	2.000	1-79;145-339	2f4o_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.599	36719.250	4.467	-10.500	18.338	4.871	44.699	55.301	7.736	10.602	56.447

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	black	814.181	173.048	150.625	361.149	1333.891	1763.899	895.292	1200.099	23.971	1339.813	775.880

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.430	0.924	1.371	1.854	0.417	-0.967	-0.668	—	-5.953	4.131	—	—	—

No JSON data available for plots.

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