Hg_chrom8_TN10mRNA_15357
Organism: Heterodera glycines Gene Locus: chr8:4137192-4142125 Feature type: polypeptideProtein Sequence
Length: 422
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.744 | 0.827 | 0.819 | 0.981 | 1.461 | 1.154 | 0.677 | 1.066 | 1.422 | 1.409 | 0.79 | 1.394 | 1.053 | 1.048 | 1.402 | 0.711 | 1.01 | 0.862 | 0.547 | 1.045 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14502
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRGMIGDPYRRHRKP
|
— | — | — | — |
1-20
|
0.969
|
1.000
|
0.000
|
0.000
|
0.269
|
0.158
|
0.028
|
0.178
|
0.099
|
0.032
|
0.142
|
0.010
|
0.106
|
0.899
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011858
|
1.000
|
1.000
|
Hsc_gene_3147.t3
|
Hsc_gene_3147.t1;Hsc_gene_3147.t2;Hsc_gene_3147.t3
|
— |
P92172.1 Dauer larva development regulatory growth factor daf-7 [Caenorhabditis elegans]
|
KAI1732606.1 transforming growth factor beta like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005576|GO:0008083
|
GO:0008150_0.893|GO:0009987_0.828|GO:0005575_0.734|GO:0110165_0.726|GO:0065007_0.693|GO:0050789_0.679|GO:0032502_0.617|GO:0048856_0.617|GO:0050794_0.600|GO:0032501_0.542|GO:0050896_0.531
|
IPR001839+308-422_325-421_326-422+|IPR015615+8-422+|IPR017948+343-358+|IPR029034+313-422_320-421+
|
SM00204+326-422+
|
PF00019+325-421+Transforming_growth_factor_beta_like_domain
|
— |
PTHR11848+8-422+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-422
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.517
|
48015.180
|
6.415
|
-0.500
|
27.488
|
10.190
|
46.682
|
53.318
|
14.218
|
13.270
|
45.261
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
390.445
|
224.699
|
757.823
|
578.341
|
286.881
|
124.280
|
162.253
|
355.116
|
10.703
|
766.645
|
442.670
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.524
|
1.227
|
-0.281
|
-1.043
|
-1.192
|
0.395
|
1.412
|
-0.988
|
-6.296
|
5.968
|
— | — | — |