Hg_chrom8_TN10mRNA_15361
Organism: Heterodera glycines Gene Locus: chr8:4173770-4175786 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.669 | 0.82 | 0.779 | 0.608 | 1.008 | 0.84 | 1.349 | 1.637 | 1.343 | 1.123 | 0.84 | 0.889 | 0.91 | 0.581 | 1.028 | 0.72 | 0.578 | 1.298 | 0.581 | 0.445 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.323
|
0.750
|
0.026
|
0.465
|
0.033
|
0.040
|
0.020
|
0.207
|
0.052
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011862
|
1.000
|
1.000
|
Hsc_gene_3140.t1
|
Hsc_gene_3111.t1;Hsc_gene_3140.t1
|
— |
Q3T0R7.1 3-ketoacyl-CoA thiolase, mitochondrial [Bos taurus]
|
KAI1713539.1 acetyl-CoA acetyltransferase [Ditylenchus destructor]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016746|GO:0016747
|
GO:0005575_0.807|GO:0110165_0.775|GO:0008150_0.692|GO:0003674_0.690|GO:0016020_0.641|GO:0005622_0.634|GO:0005737_0.623|GO:0003824_0.585|GO:0043226_0.537|GO:0043227_0.513|GO:0009987_0.511|GO:0043229_0.506
|
IPR002155+1-396_8-395_9-394+|IPR016039+7-272_7-279_130-392_274-395+|IPR020610+377-390+|IPR020613+342-358+|IPR020615+88-106+|IPR020616+7-265+|IPR020617+274-395+
|
— |
PF00108+7-265+Thiolase,_N-terminal_domain|PF02803+274-395+Thiolase,_C-terminal_domain
|
G3DSA:3.40.47.10:FF:000010+4-396+Acetyl-CoA_acetyltransferase_(Thiolase)
|
PTHR18919+7-395+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-397
|
4c2k_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
41784.840
|
7.740
|
7.500
|
24.181
|
8.816
|
39.547
|
60.453
|
13.854
|
10.327
|
55.416
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.