Hg_chrom8_TN10mRNA_15362
Organism: Heterodera glycines Gene Locus: chr8:4178212-4179080 Feature type: polypeptideProtein Sequence
Length: 141
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.33 | 0.516 | 0.245 | 1.773 | 0.909 | 1.351 | 1.773 | 0.788 | 1.054 | 0.967 | 1.669 | 0.788 | 0.818 | 1.447 | 1.52 | 0.581 | 0.967 | 0.0 | 0.417 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14507
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
HRAKPRSFHAGLKFPVGRVHRKMKKGPYAK
|
3-27
|
0.965
|
— | — | — | — |
0.000
|
— | — |
0.680
|
0.258
|
0.043
|
0.469
|
0.033
|
0.039
|
0.057
|
0.001
|
0.121
|
0.269
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002358
|
3.000
|
1.000
|
Hsc_gene_3139.t1
|
Hsc_gene_17266.t1;Hsc_gene_3139.t1
|
— |
P69141.2 Histone H2A, embryonic [Strongylocentrotus purpuratus]
|
XP_030837449.1 histone H2A, embryonic-like [Strongylocentrotus purpuratus]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000786|GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.862|GO:0110165_0.849|GO:0005622_0.713|GO:0043226_0.708|GO:0016020_0.705|GO:0043229_0.643|GO:0043227_0.628|GO:0008150_0.563|GO:0043231_0.555
|
IPR002119+2-114_5-27_6-105_34-49_49-62_77-89_91-109+|IPR003958+16-78+|IPR009072+1-120_7-103+|IPR032458+13-19+
|
SM00414+2-114+
|
PF00808+16-78+Histone-like_transcription_factor_(CBF/NF-Y)_and_archaeal_histone
|
— |
PTHR23430+6-105+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19;101-141
|
1.000
|
20-100
|
8gpn_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.845
|
15162.080
|
7.423
|
2.500
|
30.496
|
7.801
|
49.645
|
50.355
|
17.021
|
13.475
|
50.355
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1843.652
|
15.778
|
189.274
|
46.912
|
73.238
|
3318.916
|
57.335
|
3607.090
|
7.425
|
5319.706
|
3043.014
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.352
|
1.433
|
-1.903
|
0.612
|
5.516
|
-5.844
|
— |
-5.827
|
-9.631
|
— |
-6.074
|
— | — |
No JSON data available for plots.