Hg_chrom8_TN10mRNA_15364
Organism: Heterodera glycines Gene Locus: chr8:4184454-4191489 Feature type: polypeptideProtein Sequence
Length: 1,195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.934 | 0.837 | 1.263 | 0.317 | 0.99 | 1.245 | 0.897 | 2.134 | 0.688 | 1.289 | 0.609 | 1.329 | 1.511 | 0.917 | 1.605 | 1.016 | 0.645 | 0.938 | 1.094 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14509
|
— | — |
1.444
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
golgi_apparatus
|
— |
RRRR,PGTKRRS,RRLVEKQADDLRRKGI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.122
|
0.099
|
0.014
|
0.133
|
0.359
|
0.342
|
0.893
|
0.014
|
0.070
|
0.471
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002482
|
2.000
|
2.000
|
Hsc_gene_3135.t1;Hsc_gene_3135.t2
|
Hsc_gene_3135.t1;Hsc_gene_3135.t2;Hsc_gene_3136.t1;Hsc_gene_5508.t1
|
— |
Q16706.2 Alpha-mannosidase 2 [Homo sapiens]
|
KAH7729957.1 Protein AMAN-2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004559|GO:0005975|GO:0006013|GO:0030246
|
GO:0003674_0.779|GO:0005575_0.761|GO:0008150_0.758|GO:0110165_0.756|GO:0005622_0.640|GO:0016020_0.639|GO:0003824_0.637|GO:0043226_0.585|GO:0005737_0.575|GO:0016787_0.567|GO:0043229_0.549|GO:0043227_0.534|GO:0004553_0.522|GO:0016798_0.522|GO:0071944_0.521|GO:0015923_0.516|GO:0043231_0.516|GO:0008152_0.510
|
IPR000602+184-504+|IPR011013+692-1133+|IPR011330+135-499+|IPR011682+816-1022+|IPR013780+692-789+|IPR015341+554-644_554-662+|IPR027291+130-552+|IPR028995+554-664+|IPR037094+553-671+|IPR050843+183-1129+
|
SM00872+554-644+
|
PF01074+184-504+Glycosyl_hydrolases_family_38_N-terminal_domain|PF07748+816-1022+Glycosyl_hydrolases_family_38_C-terminal_domain|PF09261+554-662+Alpha_mannosidase_middle_domain
|
G3DSA:1.20.1270.50:FF:000001+553-671+Alpha-mannosidase|G3DSA:3.20.110.10:FF:000010+135-512+Alpha-mannosidase
|
PTHR11607+183-1129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-131;1194-1195
|
1.000
|
132-1193
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
134788.730
|
6.991
|
13.500
|
29.038
|
13.389
|
48.536
|
51.464
|
16.151
|
12.887
|
49.038
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
brown
|
5266.562
|
3799.491
|
6385.777
|
8356.866
|
9605.654
|
8680.183
|
6646.234
|
5731.381
|
3101.046
|
2263.328
|
2622.350
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
1.000
|
0.496
|
0.169
|
— |
-0.374
|
-0.705
|
0.357
|
— | — |
2.346
|
— | — |
No JSON data available for plots.