Hg_chrom8_TN10mRNA_15365
Organism: Heterodera glycines Gene Locus: chr8:4192311-4194051 Feature type: polypeptideProtein Sequence
Length: 309
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.903 | 0.753 | 1.177 | 0.335 | 1.025 | 1.328 | 0.848 | 2.589 | 0.863 | 1.006 | 0.343 | 1.523 | 0.539 | 0.747 | 2.312 | 1.11 | 1.114 | 0.883 | 0.249 | 1.142 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14510
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.299
|
0.005
|
0.623
|
0.112
|
0.122
|
0.115
|
0.066
|
0.360
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004720
|
2.000
|
1.000
|
Hsc_gene_3134.t1
|
— | — |
Q91YA2.3 Serine/threonine-protein kinase H1 [Mus musculus]
|
KAI1713545.1 protein kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.818|GO:0003674_0.746|GO:0005575_0.737|GO:0110165_0.729|GO:0009987_0.703|GO:0065007_0.680|GO:0050789_0.663|GO:0050794_0.646|GO:0005622_0.613|GO:0050896_0.604|GO:0003824_0.590|GO:0140096_0.564|GO:0016740_0.556|GO:0016020_0.549|GO:0016772_0.528|GO:0016773_0.522|GO:0016301_0.521|GO:0051716_0.520|GO:0004672_0.519|GO:0032501_0.515
|
IPR000719+1-156_1-251_4-132+|IPR008271+35-47+|IPR011009+2-132+
|
SM00220+1-156+
|
PF00069+4-132+Protein_kinase_domain
|
— |
PTHR24347+2-138+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
157-309
|
1.000
|
1-156
|
2jc6_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
34992.970
|
8.636
|
11.000
|
31.392
|
11.327
|
54.369
|
45.631
|
18.770
|
12.621
|
49.838
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
white
|
8.461
|
5.685
|
7.095
|
5.225
|
3.022
|
7.246
|
15.791
|
54.646
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.128
|
2.808
|
-1.652
|
— | — | — | — | — |
No JSON data available for plots.