Hg_chrom8_TN10mRNA_15366
Organism: Heterodera glycines Gene Locus: chr8:4202794-4204291 Feature type: polypeptideProtein Sequence
Length: 168
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.9 | 1.384 | 0.758 | 0.411 | 0.992 | 1.374 | 1.205 | 1.19 | 0.926 | 0.724 | 0.451 | 2.801 | 1.488 | 0.687 | 1.944 | 0.765 | 0.976 | 0.992 | 0.0 | 1.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14511
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
5-25
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.621
|
0.359
|
0.066
|
0.625
|
0.064
|
0.025
|
0.072
|
0.072
|
0.054
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004719
|
2.000
|
1.000
|
Hsc_gene_3133.t1
|
— | — |
P28024.2 Proteasome subunit beta type-4 [Xenopus laevis]
|
KAF7638769.1 Proteasome subunit beta [Meloidogyne graminicola]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0051603
|
GO:0005575_0.871|GO:0110165_0.851|GO:0005622_0.799|GO:0016020_0.761|GO:0043226_0.740|GO:0043229_0.736|GO:0043227_0.712|GO:0043231_0.687|GO:0032991_0.637|GO:0008150_0.636|GO:0005634_0.614|GO:1902494_0.562|GO:0140535_0.552|GO:1905368_0.547|GO:1905369_0.547|GO:0000502_0.546|GO:0005737_0.518
|
IPR001353+2-156+|IPR029055+1-156_1-162+
|
— |
PF00227+2-156+Proteasome_subunit
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-168
|
1.000
|
1-133
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.884
|
18829.270
|
9.413
|
6.000
|
25.000
|
11.310
|
47.619
|
52.381
|
14.881
|
10.119
|
50.595
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
128.434
|
15.964
|
16.287
|
36.298
|
37.186
|
37.415
|
212.836
|
186.817
|
95.903
|
286.418
|
204.769
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.049
|
1.266
|
— | — |
2.521
|
2.216
|
0.333
|
— | — |
-2.767
|
— | — |
No JSON data available for plots.