Hg_chrom8_TN10mRNA_15371
Organism: Heterodera glycines Gene Locus: chr8:4249566-4253798 Feature type: polypeptideProtein Sequence
Length: 772
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 0.874 | 1.272 | 0.849 | 0.993 | 0.864 | 0.817 | 1.49 | 0.892 | 1.33 | 0.765 | 1.067 | 1.259 | 1.121 | 1.137 | 1.018 | 0.807 | 1.001 | 2.092 | 0.8 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14516
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.577
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.466
|
0.368
|
0.014
|
0.605
|
0.198
|
0.346
|
0.104
|
0.072
|
0.223
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004722
|
2.000
|
1.000
|
Hsc_gene_3101.t1
|
Hsc_gene_3101.t1;Hsc_gene_5511.t1;Hsc_gene_5511.t2
|
— |
Q8R146.3 Acylamino-acid-releasing enzyme [Mus musculus]
|
KAH7730616.1 CRE-DPF-5 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008236
|
GO:0008150_0.913|GO:0005575_0.792|GO:0110165_0.792|GO:0003674_0.788|GO:0009987_0.703|GO:0003824_0.687|GO:0008152_0.682|GO:0005622_0.623|GO:0044238_0.612|GO:0016787_0.609|GO:0140096_0.591|GO:0016020_0.585|GO:0005737_0.576|GO:0043170_0.573|GO:0008233_0.569|GO:0043226_0.568|GO:0019538_0.558|GO:0043229_0.537|GO:0005488_0.513|GO:0043227_0.506
|
IPR001375+542-763+|IPR029058+457-764_512-763+|IPR045550+134-274+
|
— |
PF00326+542-763+Prolyl_oligopeptidase_family|PF19283+134-274+Acylamino-acid-releasing_enzyme,_N-terminal_domain
|
— |
PTHR42776+13-763+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
772-772
|
1.000
|
1-771
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
86922.600
|
6.031
|
-6.500
|
26.554
|
12.953
|
45.725
|
54.275
|
13.601
|
12.953
|
51.425
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
1946.662
|
2162.567
|
2265.186
|
2952.950
|
3791.860
|
2992.131
|
3077.130
|
2067.024
|
1099.872
|
450.926
|
729.046
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.163
|
0.312
|
0.491
|
0.329
|
-0.327
|
— |
-0.640
|
0.717
|
— | — |
4.298
|
— | — |
No JSON data available for plots.