Hg_chrom8_TN10mRNA_15372
Organism: Heterodera glycines Gene Locus: chr8:4253989-4257097 Feature type: polypeptideProtein Sequence
Length: 648
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.825 | 0.933 | 1.066 | 0.479 | 1.826 | 1.148 | 0.459 | 1.08 | 1.406 | 1.189 | 1.169 | 1.634 | 1.157 | 0.534 | 1.795 | 0.992 | 0.81 | 0.725 | 0.237 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14517
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.804
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRLIIQFKRSFRRNDK,RRRKREKTRKRKRSEEKKETKRKRSEEKKETKRKRDEKRGGDRKREERKREGKRERKSRE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.881
|
0.042
|
0.009
|
0.227
|
0.042
|
0.026
|
0.094
|
0.015
|
0.118
|
0.095
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011864
|
1.000
|
1.000
|
Hsc_gene_3100.t1
|
Hsc_gene_3100.t1
|
— |
Q17336.1 Pre-mRNA-splicing factor CWC22 homolog [Caenorhabditis elegans]
|
KAI1714836.1 MA3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0005515
|
GO:0005575_0.848|GO:0110165_0.847|GO:0016020_0.809|GO:0005622_0.803|GO:0043226_0.787|GO:0008150_0.786|GO:0043229_0.767|GO:0009987_0.743|GO:0043227_0.713|GO:0043231_0.688|GO:0005634_0.623
|
IPR003890+66-250_97-249+|IPR003891+355-471_356-461_356-462+|IPR016024+55-299+|IPR050781+24-587+
|
SM00543+66-250+|SM00544+356-462+
|
PF02847+356-461+MA3_domain|PF02854+97-249+MIF4G_domain
|
G3DSA:1.25.40.180:FF:000004+19-314+pre-mRNA-splicing_factor_CWC22_homolog
|
PTHR18034+24-587+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46;550-648
|
1.000
|
47-549
|
4c9b_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.501
|
74827.100
|
7.139
|
5.000
|
35.494
|
8.488
|
55.864
|
44.136
|
18.673
|
16.821
|
41.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
2213.423
|
3345.073
|
1926.344
|
1867.619
|
2072.388
|
1732.349
|
2283.814
|
1778.205
|
3121.214
|
1715.641
|
2318.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.027
|
-0.978
|
— |
0.118
|
-0.244
|
0.410
|
— |
0.504
|
— | — | — | — | — |
No JSON data available for plots.