Hg_chrom8_TN10mRNA_15374
Organism: Heterodera glycines Gene Locus: chr8:4258351-4261613 Feature type: polypeptideProtein Sequence
Length: 771
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.724 | 0.694 | 1.297 | 0.76 | 1.016 | 1.197 | 0.741 | 1.232 | 1.095 | 1.875 | 0.511 | 1.526 | 1.225 | 1.023 | 1.35 | 1.093 | 0.702 | 0.904 | 1.497 | 0.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14519
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.702
|
0.170
|
0.020
|
0.385
|
0.103
|
0.263
|
0.170
|
0.041
|
0.120
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011866
|
1.000
|
1.000
|
Hsc_gene_3098.t1
|
Hsc_gene_3098.t1
|
— | — |
KAH7730235.1 Protein Y51A2D.7 b [Aphelenchus avenae]
|
KYQ94207
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032039
|
— |
IPR029444+57-646+|IPR040316+401-702+
|
— |
PF14838+57-646+Integrator_complex_subunit_5_C-terminus
|
— |
PTHR31697+401-702+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;758-771
|
1.000
|
9-757
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
86611.350
|
5.149
|
-15.500
|
25.681
|
9.857
|
45.266
|
54.734
|
12.451
|
13.230
|
47.990
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
steelblue
|
860.099
|
1160.397
|
910.126
|
982.493
|
1167.954
|
914.375
|
1719.312
|
761.908
|
485.946
|
542.260
|
518.125
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.581
|
-0.377
|
0.220
|
0.218
|
-0.339
|
0.922
|
-0.369
|
1.317
|
— | — | — | — | — |
No JSON data available for plots.