Hg_chrom8_TN10mRNA_15375
Organism: Heterodera glycines Gene Locus: chr8:4261770-4263510 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 1.342 | 1.259 | 0.133 | 0.705 | 1.183 | 1.236 | 1.154 | 1.709 | 0.936 | 0.583 | 2.036 | 1.282 | 1.183 | 0.942 | 0.879 | 0.82 | 0.699 | 0.888 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14520
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.922
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.386
|
0.052
|
0.582
|
0.129
|
0.262
|
0.052
|
0.335
|
0.104
|
0.056
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004723
|
1.000
|
2.000
|
Hsc_gene_3097.t1;Hsc_gene_3097.t2
|
Hsc_gene_3097.t1;Hsc_gene_3097.t2
|
— |
Q9HFJ5.2 Acyl-protein thioesterase 1 [Neurospora crassa OR74A]
|
KAI1713502.1 phospholipase/Carboxylesterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0005575_0.784|GO:0110165_0.780|GO:0008150_0.704|GO:0003674_0.685|GO:0005622_0.651|GO:0005737_0.632|GO:0016020_0.627|GO:0003824_0.566|GO:0008152_0.534|GO:0043226_0.534|GO:0043229_0.528|GO:0043227_0.522|GO:0009987_0.511|GO:0016787_0.509|GO:0043231_0.507
|
IPR003140+10-221+|IPR029058+2-225_15-220+|IPR050565+9-225+
|
— |
PF02230+10-221+Phospholipase/Carboxylesterase
|
— |
PTHR10655+9-225+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
213-260
|
1.000
|
1-212
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.730
|
28436.070
|
5.300
|
-4.000
|
21.923
|
11.154
|
43.462
|
56.538
|
10.769
|
11.154
|
53.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
2035.035
|
1288.523
|
1816.674
|
2508.907
|
2851.322
|
3144.338
|
2748.709
|
3067.774
|
1627.735
|
1147.635
|
1353.392
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.267
|
0.824
|
0.574
|
0.153
|
0.156
|
-0.183
|
— | — | — | — | — | — | — |
No JSON data available for plots.