Hg_chrom8_TN10mRNA_15376
Organism: Heterodera glycines Gene Locus: chr8:4265348-4266908 Feature type: polypeptideProtein Sequence
Length: 200
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.698 | 1.628 | 1.091 | 0.517 | 1.0 | 0.897 | 0.714 | 0.25 | 1.444 | 1.149 | 1.894 | 1.176 | 1.806 | 0.962 | 0.408 | 1.143 | 0.41 | 0.758 | 0.385 | 1.324 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14521
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-32
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.186
|
0.770
|
0.152
|
0.438
|
0.043
|
0.168
|
0.138
|
0.054
|
0.181
|
0.147
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011867
|
1.000
|
1.000
|
Hsc_gene_3096.t1
|
Hsc_gene_3096.t1
|
— |
Q9SZ54.2 Putative glutathione peroxidase 7, chloroplastic [Arabidopsis thaliana]
|
CAD38524.1 putative glutathione peroxidase [Globodera rostochiensis]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004601|GO:0006979
|
GO:0005575_0.790|GO:0110165_0.785|GO:0008150_0.782|GO:0005622_0.728|GO:0005737_0.714|GO:0016020_0.688|GO:0043226_0.685|GO:0043229_0.678|GO:0009987_0.655|GO:0043227_0.649|GO:0043231_0.642|GO:0003674_0.622|GO:0050896_0.599|GO:0051716_0.535|GO:0042221_0.515
|
IPR000889+15-200_32-199_32-200_41-194_42-150_60-77_96-112_162-171+|IPR013766+36-199+|IPR029759+62-77+|IPR036249+40-198+
|
— |
PF00255+42-150+Glutathione_peroxidase
|
G3DSA:3.40.30.10:FF:000025+33-200+Glutathione_peroxidase
|
PTHR11592+32-199+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-200
|
2p5r_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
22604.980
|
9.177
|
5.500
|
27.000
|
12.000
|
48.000
|
52.000
|
15.000
|
12.000
|
47.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightcyan
|
2764.516
|
1734.080
|
2091.505
|
2006.961
|
2837.814
|
3303.360
|
5257.544
|
4808.222
|
1111.814
|
2996.090
|
2188.543
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.468
|
0.234
|
0.681
|
0.438
|
0.271
|
— | — | — | — | — |
No JSON data available for plots.