Hg_chrom8_TN10mRNA_15377
Organism: Heterodera glycines Gene Locus: chr8:4268893-4273573 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 1.409 | 1.271 | 0.402 | 2.059 | 0.956 | 0.749 | 0.699 | 0.777 | 1.449 | 1.201 | 1.371 | 0.518 | 0.852 | 1.332 | 0.932 | 0.573 | 0.777 | 0.179 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14522
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.607
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
PGVKRGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.350
|
0.100
|
0.006
|
0.721
|
0.181
|
0.133
|
0.282
|
0.003
|
0.300
|
0.030
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011868
|
1.000
|
1.000
|
Hsc_gene_3095.t1
|
Hsc_gene_3095.t1
|
— |
O01479.2 Tropomodulin [Caenorhabditis elegans]
|
KAI1713532.1 tropomodulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005523|GO:0051694
|
GO:0005575_0.814|GO:0110165_0.812|GO:0008150_0.756|GO:0005622_0.693|GO:0009987_0.667|GO:0043226_0.631|GO:0043229_0.620|GO:0003674_0.579|GO:0005488_0.565|GO:0005737_0.564|GO:0005515_0.528|GO:0043228_0.505|GO:0043232_0.505
|
IPR004934+43-165_43-424_188-216+|IPR032675+256-426+
|
— |
PF03250+43-165_188-216+Tropomodulin
|
G3DSA:3.80.10.10:FF:000099+256-424+Tropomodulin,_isoform_C
|
PTHR10901+43-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-207;409-429
|
1.000
|
208-408
|
1pgv_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
48171.900
|
4.690
|
-18.000
|
35.198
|
5.594
|
55.012
|
44.988
|
15.851
|
19.347
|
47.319
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1971.789
|
1361.568
|
2075.614
|
1271.420
|
1391.854
|
1921.942
|
1734.126
|
2403.451
|
1037.713
|
3288.302
|
2323.764
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.378
|
-0.236
|
-0.598
|
— |
0.480
|
— |
0.218
|
-0.329
|
— | — | — | — | — |
No JSON data available for plots.