SCN Proteipedia

Hg_chrom8_TN10mRNA_15378

Organism: Heterodera glycines Gene Locus: chr8:4282602-4289858 Feature type: polypeptide

Protein Sequence

Length: 1,171

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.172	0.715	0.776	0.324	1.267	2.058	0.854	1.58	0.74	0.796	0.789	1.105	0.64	1.511	1.551	1.391	0.798	0.712	0.263	0.578	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14523	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|cell_membrane	—	KREESHVEQMKAKER,IKKRIKAIKQRIERERKQLEKEAKQR	28-63	0.798	31-71	0.982	—	—	0.000	—	—	0.235	0.180	0.033	0.687	0.164	0.218	0.229	0.055	0.567	0.061

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011869	1.000	1.000	Hsc_gene_3093.t1	Hsc_gene_3093.t1;Hsc_gene_3093.t2	—	Q9ULJ8.2 Neurabin-1 [Homo sapiens]	KAI3416112.1 SAM domain (Sterile alpha motif) [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0005575_0.935\|GO:0110165_0.916\|GO:0008150_0.825\|GO:0005622_0.792\|GO:0009987_0.791\|GO:0016020_0.769\|GO:0043226_0.679\|GO:0065007_0.664\|GO:0050789_0.645\|GO:0050794_0.632\|GO:0043229_0.626\|GO:0071944_0.625\|GO:0005886_0.616\|GO:0071840_0.572\|GO:0016043_0.571\|GO:0005737_0.550\|GO:0003674_0.529\|GO:0032502_0.523\|GO:0048856_0.523\|GO:0030054_0.508\|GO:0005488_0.505	IPR001478+525-611_527-615_529-611_535-615+\|IPR001660+1080-1146_1081-1143_1083-1146+\|IPR013761+1077-1149_1080-1149+\|IPR036034+506-614_510-616+\|IPR040645+462-519+\|IPR043446+120-680+	SM00228+535-615+\|SM00454+1080-1146+	PF00595+529-611+PDZ_domain\|PF07647+1081-1143+SAM_domain_(Sterile_alpha_motif)\|PF17817+462-519+PDZ_domain	G3DSA:1.10.150.50:FF:000008+1077-1150+Neurabin-1_isoform_1-like_protein\|G3DSA:2.30.42.10:FF:000010+506-614+Neurabin-1_isoform_1	PTHR16154+120-680+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-518;623-1057	2.000	519-622;1058-1171	3egh_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.886	128179.520	8.917	29.500	27.839	7.771	53.544	46.456	15.969	11.870	52.690

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	1461.227	3109.462	1791.351	1058.611	1039.141	3657.332	1247.852	1996.338	1053.817	389.972	674.477

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.025	-1.692	-0.650	—	1.831	-1.542	-0.977	-0.536	—	—	—	—	—

No JSON data available for plots.

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