Hg_chrom8_TN10mRNA_15379
Organism: Heterodera glycines Gene Locus: chr8:4290816-4293597 Feature type: polypeptideProtein Sequence
Length: 369
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.693 | 0.693 | 0.591 | 0.374 | 0.678 | 1.112 | 0.581 | 2.168 | 1.204 | 1.392 | 0.493 | 1.754 | 2.635 | 0.73 | 1.217 | 1.278 | 0.889 | 1.232 | 1.668 | 0.956 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14524
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRVKRRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.087
|
0.305
|
0.042
|
0.131
|
0.952
|
0.200
|
0.600
|
0.044
|
0.149
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004724
|
1.000
|
2.000
|
Hsc_gene_3092.t1;Hsc_gene_3092.t2
|
Hsc_gene_3092.t1;Hsc_gene_3092.t2
|
— |
O44186.1 Putative sphingolipid delta(4)-desaturase [Caenorhabditis elegans]
|
KAF7639961.1 Lipid_DES domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.855|GO:0008150_0.845|GO:0009987_0.794|GO:0003824_0.727|GO:0008152_0.654|GO:0044237_0.636|GO:0044238_0.632|GO:0009058_0.629|GO:0044249_0.613|GO:0005575_0.593|GO:0006629_0.593|GO:0110165_0.593|GO:0008610_0.592|GO:0044255_0.585|GO:0006643_0.573|GO:0046467_0.572|GO:0006665_0.567|GO:0030148_0.567|GO:0016491_0.565|GO:0016020_0.560|GO:0005886_0.532|GO:0071944_0.532
|
IPR005804+67-227+|IPR013866+7-45_11-42+
|
SM01269+7-45+
|
PF00487+67-227+Fatty_acid_desaturase|PF08557+11-42+Sphingolipid_Delta4-desaturase_(DES)
|
— |
PTHR12879+9-224+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
363-369
|
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.757
|
42647.400
|
9.401
|
15.000
|
20.867
|
19.241
|
42.547
|
57.453
|
13.550
|
7.317
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
midnightblue
|
1110.004
|
1549.244
|
723.694
|
820.784
|
1241.867
|
977.415
|
1285.400
|
1179.391
|
198.091
|
1791.025
|
1108.339
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.328
|
-1.054
|
0.291
|
0.566
|
-0.331
|
0.405
|
— | — |
-3.286
|
— | — | — | — |
No JSON data available for plots.