Hg_chrom8_TN10mRNA_15380
Organism: Heterodera glycines Gene Locus: chr8:4294020-4295958 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.679 | 0.849 | 0.885 | 0.419 | 1.784 | 1.248 | 0.637 | 0.852 | 1.622 | 1.184 | 1.511 | 2.147 | 1.149 | 1.029 | 1.341 | 0.765 | 0.798 | 0.553 | 0.374 | 0.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14525
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.932
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RGRKRFR,KKKKDQKKMKKKKET,RRKKIKEEREAERKRYS,HEKTKKKKDQKKMKKKK,RKRFRNQNMSKAEKLRRKK,KRFRNQNMSKAEKLRRKKI,RKRYSFMERIKIRNEQRKK,KRYSFMERIKIRNEQRKKS
|
— | — |
1-41
|
1.000
|
— | — |
0.000
|
— | — |
0.129
|
0.839
|
0.027
|
0.132
|
0.086
|
0.035
|
0.032
|
0.005
|
0.048
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002483
|
3.000
|
1.000
|
Hsc_gene_3091.t1
|
Hsc_gene_3091.t1
|
— |
Q98RJ8.1 Large ribosomal subunit protein uL1 [Mycoplasmopsis pulmonis UAB CTIP]
|
KAH7726526.1 L1P family of ribosomal proteins containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.932|GO:0110165_0.929|GO:0005622_0.908|GO:0043226_0.890|GO:0016020_0.877|GO:0043229_0.870|GO:0043227_0.823|GO:0043231_0.812|GO:0005737_0.792|GO:0005739_0.567
|
IPR016095+173-268+|IPR023674+111-329+|IPR028364+139-322+
|
— |
PF00687+139-322+Ribosomal_protein_L1p/L10e_family
|
— |
PTHR36427+61-335+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72;337-411
|
1.000
|
73-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.674
|
47198.400
|
8.569
|
7.500
|
33.820
|
8.029
|
52.555
|
47.445
|
18.248
|
15.572
|
40.146
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
2796.347
|
1291.433
|
1247.685
|
1208.104
|
1378.786
|
1203.820
|
1287.097
|
1474.649
|
1965.552
|
7350.515
|
5042.674
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.280
|
-0.233
|
— |
0.159
|
-0.181
|
— | — | — |
-2.020
|
— |
-2.047
|
— | — |
No JSON data available for plots.