Hg_chrom8_TN10mRNA_15381
Organism: Heterodera glycines Gene Locus: chr8:4296729-4297598 Feature type: polypeptideProtein Sequence
Length: 160
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.799 | 0.727 | 0.114 | 0.862 | 1.354 | 1.282 | 0.744 | 0.625 | 1.25 | 0.929 | 1.515 | 2.574 | 1.563 | 1.082 | 2.423 | 0.804 | 1.127 | 0.189 | 0.0 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14526
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
mitochondrion
|
— |
RGRKRFR,RKRYSFMERIKIRNEQRKK,KRYSFMERIKIRNEQRKKS,GRKRFRNQNMSKAEKLRRKKIKEEREAERKRYSFMERIKIRNEQRK
|
— | — |
1-41
|
1.000
|
— | — |
0.000
|
— | — |
0.387
|
0.394
|
0.193
|
0.220
|
0.076
|
0.014
|
0.011
|
0.010
|
0.072
|
0.100
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002483
|
3.000
|
1.000
|
Hsc_gene_3091.t1
|
Hsc_gene_3091.t1
|
— | — |
KAI6221284.1 39S ribosomal protein L1, mitochondrial [Aphelenchoides fujianensis]
|
No
|
0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72
|
1.000
|
73-160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
18591.750
|
11.195
|
22.000
|
31.875
|
9.375
|
52.500
|
47.500
|
23.125
|
8.750
|
38.750
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
144.599
|
84.436
|
120.320
|
90.457
|
98.793
|
88.595
|
184.508
|
272.591
|
12.609
|
270.775
|
160.133
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
— |
-0.302
|
— | — |
1.069
|
1.518
|
-0.420
|
-4.627
|
3.128
|
— | — | — |
No JSON data available for plots.