Hg_chrom8_TN10mRNA_15383
Organism: Heterodera glycines Gene Locus: chr8:4298229-4299215 Feature type: polypeptideProtein Sequence
Length: 152
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.382 | 1.071 | 1.316 | 1.134 | 0.877 | 1.181 | 0.313 | 1.645 | 1.023 | 1.245 | 0.897 | 2.322 | 1.096 | 1.265 | 0.94 | 1.598 | 0.755 | 0.897 | 2.024 | 0.774 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14527
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.410
|
0.254
|
0.006
|
0.697
|
0.467
|
0.286
|
0.425
|
0.080
|
0.209
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011870
|
1.000
|
1.000
|
Hsc_gene_3090.t1
|
Hsc_gene_3090.t1
|
— |
A6H795.1 Ubiquitin-conjugating enzyme E2 W [Bos taurus]
|
KAI1713519.1 ubiquitin-conjugating enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.936|GO:0008152_0.725|GO:0043170_0.725|GO:0044238_0.709|GO:0003674_0.683|GO:0005575_0.680|GO:0019538_0.680|GO:0110165_0.653|GO:0009987_0.594|GO:0050896_0.575|GO:0005622_0.572|GO:0003824_0.564|GO:0140096_0.560|GO:0016740_0.548|GO:0016746_0.543|GO:0016755_0.543|GO:0019787_0.543|GO:0004842_0.538|GO:0051716_0.515|GO:0016020_0.503
|
IPR000608+3-152_6-120_7-140+|IPR016135+2-152_5-127+|IPR050113+3-126+
|
SM00212+6-152+
|
PF00179+7-140+Ubiquitin-conjugating_enzyme
|
G3DSA:3.10.110.10:FF:000022+2-152+Ubiquitin-conjugating_enzyme_E2_W
|
PTHR24067+3-126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-152
|
2mt6_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
17539.980
|
6.322
|
-0.500
|
26.316
|
12.500
|
51.316
|
48.684
|
13.816
|
12.500
|
49.342
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
671.062
|
593.980
|
614.650
|
474.586
|
477.437
|
1244.877
|
560.240
|
1680.241
|
750.446
|
255.808
|
467.796
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.179
|
-0.461
|
-0.265
|
— |
1.398
|
-1.141
|
0.330
|
-1.442
|
— | — | — | — | — |
No JSON data available for plots.