Hg_chrom8_TN10mRNA_15386
Organism: Heterodera glycines Gene Locus: chr8:4305837-4308942 Feature type: polypeptideProtein Sequence
Length: 630
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.403 | 0.952 | 0.547 | 0.741 | 1.18 | 0.661 | 1.429 | 1.235 | 1.437 | 0.625 | 0.84 | 1.94 | 0.733 | 1.361 | 1.156 | 0.755 | 1.01 | 1.343 | 0.887 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14530
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.135
|
0.266
|
0.035
|
0.261
|
0.799
|
0.590
|
0.625
|
0.023
|
0.155
|
0.035
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011871
|
1.000
|
1.000
|
Hsc_gene_3086.t1
|
Hsc_gene_3086.t1;Hsc_gene_3534.t1
|
— |
A1L244.1 Phosphatidylinositol-3-phosphatase SAC1-B [Danio rerio]
|
KAI1718018.1 sacI homology domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016791
|
GO:0005575_0.863|GO:0008150_0.863|GO:0110165_0.862|GO:0009987_0.743|GO:0016020_0.705|GO:0005622_0.671|GO:0005737_0.625|GO:0071944_0.610|GO:0003674_0.595|GO:0005886_0.590|GO:0043226_0.563|GO:0043229_0.561|GO:0043227_0.533|GO:0043231_0.527|GO:0008152_0.517|GO:0044238_0.501
|
IPR002013+71-374_134-499+
|
— |
PF02383+71-374+SacI_homology_domain
|
— |
PTHR45662+11-627+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-630
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
71930.060
|
8.586
|
16.000
|
23.333
|
14.603
|
46.667
|
53.333
|
13.651
|
9.683
|
47.937
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1631.701
|
1964.902
|
2175.284
|
1693.313
|
1918.709
|
2632.061
|
2162.672
|
2475.562
|
819.130
|
890.904
|
860.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.352
|
-0.253
|
0.148
|
0.471
|
-0.274
|
— | — | — | — | — | — | — |
No JSON data available for plots.