SCN Proteipedia

Hg_chrom8_TN10mRNA_15390

Organism: Heterodera glycines Gene Locus: chr8:4333784-4338577 Feature type: polypeptide

Protein Sequence

Length: 989

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.835	1.011	0.809	0.662	0.792	0.959	0.855	0.607	1.348	1.612	0.873	1.784	1.601	0.739	0.681	0.968	1.011	1.118	1.322	1.011	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom8_TN10gene_14534	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.091	0.121	0.016	0.266	0.194	0.568	0.279	0.003	0.604	0.030

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000851	3.000	3.000	Hsc_gene_11474.t1;Hsc_gene_11474.t3;Hsc_gene_3083.t1	Hsc_gene_3083.t1;Hsc_gene_6167.t1	—	Q09573.2 Potassium/chloride cotransporter 3 [Caenorhabditis elegans]	KAI1708469.1 amino acid permease domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006811\|GO:0015377\|GO:0016020\|GO:0022857\|GO:0055085	GO:0008150_0.970\|GO:0009987_0.904\|GO:0051179_0.837\|GO:0005575_0.835\|GO:0006810_0.829\|GO:0051234_0.829\|GO:0110165_0.802\|GO:0003674_0.787\|GO:0016020_0.772\|GO:0055085_0.738\|GO:0071944_0.737\|GO:0006811_0.730\|GO:0005886_0.724\|GO:0005215_0.691\|GO:0022857_0.691\|GO:0034220_0.687\|GO:0015075_0.659\|GO:0098660_0.658\|GO:0006812_0.642\|GO:0098655_0.641\|GO:0008324_0.625\|GO:0015318_0.615\|GO:0030001_0.614\|GO:0098662_0.605\|GO:0022890_0.568\|GO:0046873_0.568\|GO:0006820_0.560\|GO:0015698_0.557\|GO:0006821_0.553\|GO:0098656_0.553\|GO:0098661_0.553\|GO:1902476_0.547\|GO:0022804_0.530\|GO:0008509_0.525\|GO:0015103_0.521\|GO:0022853_0.520\|GO:0015108_0.519\|GO:0015291_0.519\|GO:0015293_0.513\|GO:0015294_0.513	IPR004841+41-174_317-606+\|IPR004842+25-986+\|IPR018491+759-986+	—	PF00324+41-174_317-606+Amino_acid_permease\|PF03522+759-986+Solute_carrier_family_12	—	PTHR11827+25-986+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	857-923	2.000	1-856;924-989	6vwa_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.687	110069.950	7.163	5.000	19.515	12.133	40.546	59.454	10.313	9.201	49.242

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	purple	601.481	155.097	311.724	343.841	778.253	1393.898	1210.911	1096.932	16.745	634.925	369.991

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.772	1.012	0.254	1.148	0.855	—	—	—	—	—	—	—	—

No JSON data available for plots.

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