Hg_chrom8_TN10mRNA_15395
Organism: Heterodera glycines Gene Locus: chr8:4380977-4389132 Feature type: polypeptideProtein Sequence
Length: 697
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.834 | 1.401 | 0.835 | 0.94 | 1.1 | 1.619 | 0.888 | 1.506 | 0.606 | 0.795 | 0.848 | 1.35 | 1.076 | 1.545 | 1.464 | 1.517 | 0.635 | 0.739 | 0.221 | 0.253 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14539
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RKPKFHGSEEKKKKPT,KKNSDDAKKSEGRRTGK
|
4-29
|
0.983
|
— | — | — | — |
0.018
|
— | — |
0.208
|
0.056
|
0.031
|
0.333
|
0.266
|
0.291
|
0.246
|
0.009
|
0.507
|
0.372
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004726
|
1.000
|
2.000
|
Hsc_gene_3076.t1;Hsc_gene_3076.t3
|
Hsc_gene_3076.t1
|
— | — |
KAI3416094.1 Delta-like protein 4 [Globodera pallida]
|
No
|
-0.440
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
179-697
|
1.000
|
1-178
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
76435.240
|
8.537
|
21.500
|
26.973
|
8.034
|
53.802
|
46.198
|
15.782
|
11.191
|
55.380
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1524.588
|
1666.311
|
1255.192
|
697.452
|
326.916
|
840.937
|
356.137
|
843.244
|
639.640
|
3945.521
|
2528.715
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.639
|
-1.394
|
-0.738
|
-1.125
|
1.377
|
-1.228
|
— |
-1.103
|
— | — | — | — | — |
No JSON data available for plots.