Hg_chrom8_TN10mRNA_15398
Organism: Heterodera glycines Gene Locus: chr8:4393864-4397058 Feature type: polypeptideProtein Sequence
Length: 394
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.121 | 1.535 | 1.2 | 0.263 | 1.227 | 1.952 | 0.544 | 1.015 | 0.959 | 1.132 | 1.077 | 1.642 | 0.987 | 0.683 | 0.984 | 1.088 | 0.957 | 0.692 | 0.195 | 0.597 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14542
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.169
|
0.297
|
0.009
|
0.604
|
0.170
|
0.501
|
0.568
|
0.019
|
0.401
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011877
|
1.000
|
1.000
|
Hsc_gene_3073.t1
|
Hsc_gene_3073.t1
|
— |
B1V8A0.1 Endophilin-A homolog [Caenorhabditis elegans]
|
KAI3416086.1 Endophilin-A [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005737
|
GO:0008150_0.953|GO:0009987_0.900|GO:0005575_0.896|GO:0110165_0.893|GO:0005622_0.755|GO:0065007_0.694|GO:0050789_0.645|GO:0016020_0.631|GO:0050794_0.629|GO:0003674_0.595|GO:0005488_0.584|GO:0016043_0.577|GO:0071840_0.577|GO:0043226_0.557|GO:0051179_0.555|GO:0005737_0.550|GO:0043229_0.530|GO:0051234_0.527|GO:0050896_0.509|GO:0006996_0.506|GO:0005515_0.503
|
IPR001452+325-384_328-338_328-383_332-380_342-357_370-382+|IPR004148+5-240_6-239_18-247+|IPR027267+1-245_11-239+|IPR036028+326-389+|IPR050384+37-381+
|
SM00326+328-383+|SM00721+5-240+
|
PF03114+6-239+BAR_domain|PF14604+332-380+Variant_SH3_domain
|
— |
PTHR14167+37-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
231-336;394-394
|
2.000
|
1-230;337-393
|
1zww_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
43991.170
|
5.702
|
-4.000
|
27.919
|
7.868
|
55.584
|
44.416
|
13.959
|
13.959
|
49.746
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1512.924
|
5791.300
|
1308.721
|
805.076
|
770.014
|
1152.675
|
1831.659
|
2236.242
|
951.274
|
694.705
|
804.663
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.374
|
-2.984
|
-0.593
|
— |
0.597
|
0.678
|
0.853
|
— | — | — | — | — | — |
No JSON data available for plots.