Hg_chrom8_TN10mRNA_15400
Organism: Heterodera glycines Gene Locus: chr8:4401002-4403381 Feature type: polypeptideProtein Sequence
Length: 538
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.016 | 0.648 | 0.372 | 0.769 | 0.558 | 0.763 | 0.708 | 0.836 | 0.95 | 2.035 | 0.338 | 2.405 | 1.807 | 1.144 | 0.91 | 1.593 | 0.945 | 1.042 | 0.429 | 0.984 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14544
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RRKSSDSNWRRRRNF
|
— | — |
37-57
|
0.999
|
— | — |
0.000
|
— | — |
0.082
|
0.125
|
0.023
|
0.107
|
0.307
|
0.412
|
0.408
|
0.058
|
0.783
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011879
|
1.000
|
1.000
|
Hsc_gene_3071.t1
|
Hsc_gene_3071.t1
|
— |
P0C6A1.1 Solute carrier family 2, facilitated glucose transporter member 7 [Mus musculus]
|
KAI1710526.1 sugar transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0022857|GO:0055085
|
GO:0008150_0.907|GO:0005575_0.895|GO:0110165_0.893|GO:0016020_0.854|GO:0009987_0.848|GO:0071944_0.817|GO:0005886_0.813|GO:0051179_0.763|GO:0051234_0.763|GO:0006810_0.761|GO:0003674_0.697|GO:0055085_0.676|GO:0005215_0.600|GO:0022857_0.600|GO:0005622_0.568|GO:0043226_0.553|GO:0008643_0.552|GO:0008645_0.552|GO:0015749_0.552|GO:0034219_0.552|GO:0043229_0.529|GO:1904659_0.513
|
IPR005828+79-509+|IPR020846+57-502+|IPR036259+48-517_60-505+|IPR045263+54-522+
|
— |
PF00083+79-509+Sugar_(and_other)_transporter
|
— |
PTHR23503+54-522+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-538
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
58731.000
|
8.462
|
11.500
|
13.755
|
12.082
|
36.431
|
63.569
|
8.364
|
5.390
|
51.487
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
431.880
|
81.057
|
43.059
|
60.699
|
90.601
|
191.380
|
1161.762
|
272.218
|
142.510
|
1069.800
|
672.390
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.145
|
-0.554
|
0.607
|
0.544
|
1.094
|
2.611
|
— |
2.238
|
-2.995
|
— |
-3.429
|
— | — |
No JSON data available for plots.