Hg_chrom8_TN10mRNA_15401
Organism: Heterodera glycines Gene Locus: chr8:4403674-4405135 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.338 | 0.916 | 0.62 | 0.899 | 0.738 | 0.899 | 1.619 | 0.879 | 1.264 | 1.09 | 1.058 | 1.799 | 1.038 | 0.734 | 0.976 | 0.59 | 0.872 | 1.384 | 1.375 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom8_TN10gene_14545
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.870
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.575
|
0.221
|
0.024
|
0.623
|
0.105
|
0.261
|
0.121
|
0.037
|
0.084
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004727
|
1.000
|
2.000
|
Hsc_gene_3070.t1;Hsc_gene_3070.t2
|
Hsc_gene_3070.t1;Hsc_gene_3070.t2
|
— |
Q08E20.1 S-formylglutathione hydrolase [Bos taurus]
|
KAI1717842.1 putative esterase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0018738|GO:0046294
|
GO:0003674_0.879|GO:0003824_0.790|GO:0016787_0.680|GO:0005575_0.652|GO:0016788_0.651|GO:0110165_0.567|GO:0008150_0.533
|
IPR000801+23-268+|IPR014186+2-274_6-274+|IPR029058+4-276_5-277+
|
— |
PF00756+23-268+Putative_esterase
|
— |
PTHR10061+2-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.811
|
31306.640
|
7.754
|
5.500
|
24.460
|
16.187
|
43.525
|
56.475
|
14.029
|
10.432
|
49.640
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
greenyellow
|
1312.523
|
677.923
|
1155.001
|
1679.800
|
1745.444
|
1663.275
|
1029.098
|
1093.620
|
1697.523
|
1077.583
|
1343.272
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
1.172
|
0.649
|
— | — |
-0.683
|
-0.711
|
— | — | — | — | — | — |
No JSON data available for plots.